tmalign_cluster.cc File Reference

#include <devel/init.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <core/pose/Pose.hh>
#include <core/pose/init_id_map.hh>
#include <core/import_pose/import_pose.hh>
#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <core/conformation/Residue.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <iostream>
#include <protocols/hybridization/TMalign.hh>
#include <protocols/hybridization/util.hh>

Functions
void	do_tmscore (core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::Real &tmscore)
void	do_tmalign (core::pose::Pose &aligned_pose, core::pose::Pose const &ref_pose)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("tmalign_cluster")

Function Documentation

do_tmalign()

void do_tmalign	(	core::pose::Pose &	aligned_pose,
		core::pose::Pose const &	ref_pose
	)

References challenge::aligned.

Referenced by main().

do_tmscore()

void do_tmscore	(	core::pose::Pose const &	pose1,
		core::pose::Pose const &	pose2,
		core::Real &	tmscore
	)

References min(), test.T008_Serialization::pose1, and test.T008_Serialization::pose2.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References basic::thread_manager::APPLICATIONS_OR_APPLICATION_PROTOCOLS, argv, basic::options::OptionKeys::cluster::energy_based_clustering::cluster_radius, do_tmalign(), do_tmscore(), basic::thread_manager::RosettaThreadManager::do_work_vector_in_threads(), test.T009_Exceptions::e, kmeans_adaptive_kernel_density_bb_dependent_rotlib::fn, utility::SingletonBase< RosettaThreadManager >::get_instance(), create_a3b_hbs::i, basic::Tracer::Info, basic::init(), create_a3b_hbs::j, basic::options::OptionKeys::frags::contacts::neighbors, NEW_OPT, basic::options::option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::in::file::s, subloop_histogram::size, tag, numeric::interpolation::to_string(), basic::thread_manager::RosettaThreadManager::total_threads(), and TR.

Variable Documentation

TR

basic::Tracer TR("tmalign_cluster") ( "tmalign_cluster"  )

static

Referenced by main().