carbohydrates::glycan_dock Namespace Reference

Functions
BooleanOptionKey const	glycan_dock ("carbohydrates:glycan_dock")
IntegerOptionKey const	n_repeats ("carbohydrates:glycan_dock:n_repeats")
BooleanOptionKey const	refine_only ("carbohydrates:glycan_dock:refine_only")
BooleanOptionKey const	prepack_only ("carbohydrates:glycan_dock:prepack_only")
BooleanOptionKey const	rand_glycan_jump_res ("carbohydrates:glycan_dock:rand_glycan_jump_res")
BooleanOptionKey const	stage1_rotate_glycan_about_com ("carbohydrates:glycan_dock:stage1_rotate_glycan_about_com")
RealOptionKey const	stage1_perturb_glycan_com_trans_mag ("carbohydrates:glycan_dock:stage1_perturb_glycan_com_trans_mag")
RealOptionKey const	stage1_perturb_glycan_com_rot_mag ("carbohydrates:glycan_dock:stage1_perturb_glycan_com_rot_mag")
RealOptionKey const	stage1_torsion_uniform_pert_mag ("carbohydrates:glycan_dock:stage1_torsion_uniform_pert_mag")
RealOptionKey const	mc_kt ("carbohydrates:glycan_dock:mc_kt")
IntegerOptionKey const	n_rigid_body_rounds ("carbohydrates:glycan_dock:n_rigid_body_rounds")
BooleanOptionKey const	slide_glycan_into_contact ("carbohydrates:glycan_dock:slide_glycan_into_contact")
RealOptionKey const	stage2_trans_mag ("carbohydrates:glycan_dock:stage2_trans_mag")
RealOptionKey const	stage2_rot_mag ("carbohydrates:glycan_dock:stage2_rot_mag")
IntegerOptionKey const	n_torsion_rounds ("carbohydrates:glycan_dock:n_torsion_rounds")
IntegerOptionKey const	full_packing_frequency ("carbohydrates:glycan_dock:full_packing_frequency")
RealOptionKey const	interface_packing_distance ("carbohydrates:glycan_dock:interface_packing_distance")
BooleanOptionKey const	ramp_scorefxn ("carbohydrates:glycan_dock:ramp_scorefxn")
BooleanOptionKey const	watch_in_pymol ("carbohydrates:glycan_dock:watch_in_pymol")

Function Documentation

full_packing_frequency()

IntegerOptionKey const carbohydrates::glycan_dock::full_packing_frequency

(

"carbohydrates:glycan_dock:full_packing_frequency"

)

References basic::options::OptionKeys::carbohydrates::glycan_dock::glycan_dock.

glycan_dock()

BooleanOptionKey const carbohydrates::glycan_dock::glycan_dock

(

"carbohydrates:glycan_dock"

)

Referenced by n_repeats(), prepack_only(), rand_glycan_jump_res(), refine_only(), and stage1_rotate_glycan_about_com().

interface_packing_distance()

RealOptionKey const carbohydrates::glycan_dock::interface_packing_distance

(

"carbohydrates:glycan_dock:interface_packing_distance"

)

References basic::options::OptionKeys::carbohydrates::glycan_dock::glycan_dock.

mc_kt()

RealOptionKey const carbohydrates::glycan_dock::mc_kt

(

"carbohydrates:glycan_dock:mc_kt"

)

References basic::options::OptionKeys::carbohydrates::glycan_dock::glycan_dock.

n_repeats()

IntegerOptionKey const carbohydrates::glycan_dock::n_repeats

(

"carbohydrates:glycan_dock:n_repeats"

)

References glycan_dock().

n_rigid_body_rounds()

IntegerOptionKey const carbohydrates::glycan_dock::n_rigid_body_rounds

(

"carbohydrates:glycan_dock:n_rigid_body_rounds"

)

References basic::options::OptionKeys::carbohydrates::glycan_dock::glycan_dock.

n_torsion_rounds()

IntegerOptionKey const carbohydrates::glycan_dock::n_torsion_rounds

(

"carbohydrates:glycan_dock:n_torsion_rounds"

)

References basic::options::OptionKeys::carbohydrates::glycan_dock::glycan_dock.

prepack_only()

BooleanOptionKey const carbohydrates::glycan_dock::prepack_only

(

"carbohydrates:glycan_dock:prepack_only"

)

References glycan_dock().

ramp_scorefxn()

BooleanOptionKey const carbohydrates::glycan_dock::ramp_scorefxn

(

"carbohydrates:glycan_dock:ramp_scorefxn"

)

References basic::options::OptionKeys::carbohydrates::glycan_dock::glycan_dock.

rand_glycan_jump_res()

BooleanOptionKey const carbohydrates::glycan_dock::rand_glycan_jump_res

(

"carbohydrates:glycan_dock:rand_glycan_jump_res"

)

References glycan_dock().

refine_only()

BooleanOptionKey const carbohydrates::glycan_dock::refine_only

(

"carbohydrates:glycan_dock:refine_only"

)

References glycan_dock().

slide_glycan_into_contact()

BooleanOptionKey const carbohydrates::glycan_dock::slide_glycan_into_contact

(

"carbohydrates:glycan_dock:slide_glycan_into_contact"

)

References basic::options::OptionKeys::carbohydrates::glycan_dock::glycan_dock.

stage1_perturb_glycan_com_rot_mag()

RealOptionKey const carbohydrates::glycan_dock::stage1_perturb_glycan_com_rot_mag

(

"carbohydrates:glycan_dock:stage1_perturb_glycan_com_rot_mag"

)

References basic::options::OptionKeys::carbohydrates::glycan_dock::glycan_dock.

stage1_perturb_glycan_com_trans_mag()

RealOptionKey const carbohydrates::glycan_dock::stage1_perturb_glycan_com_trans_mag

(

"carbohydrates:glycan_dock:stage1_perturb_glycan_com_trans_mag"

)

References basic::options::OptionKeys::carbohydrates::glycan_dock::glycan_dock.

stage1_rotate_glycan_about_com()

BooleanOptionKey const carbohydrates::glycan_dock::stage1_rotate_glycan_about_com

(

"carbohydrates:glycan_dock:stage1_rotate_glycan_about_com"

)

References glycan_dock().

stage1_torsion_uniform_pert_mag()

RealOptionKey const carbohydrates::glycan_dock::stage1_torsion_uniform_pert_mag

(

"carbohydrates:glycan_dock:stage1_torsion_uniform_pert_mag"

)

References basic::options::OptionKeys::carbohydrates::glycan_dock::glycan_dock.

stage2_rot_mag()

RealOptionKey const carbohydrates::glycan_dock::stage2_rot_mag

(

"carbohydrates:glycan_dock:stage2_rot_mag"

)

References basic::options::OptionKeys::carbohydrates::glycan_dock::glycan_dock.

stage2_trans_mag()

RealOptionKey const carbohydrates::glycan_dock::stage2_trans_mag

(

"carbohydrates:glycan_dock:stage2_trans_mag"

)

References basic::options::OptionKeys::carbohydrates::glycan_dock::glycan_dock.

watch_in_pymol()

BooleanOptionKey const carbohydrates::glycan_dock::watch_in_pymol

(

"carbohydrates:glycan_dock:watch_in_pymol"

)

References basic::options::OptionKeys::carbohydrates::glycan_dock::glycan_dock.