rna_denovo.cc File Reference

#include <utility/json_utilities.hh>
#include <core/types.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/Pose.hh>
#include <devel/init.hh>
#include <protocols/rna/denovo/RNA_DeNovoProtocol.hh>
#include <core/import_pose/RNA_DeNovoSetup.hh>
#include <core/import_pose/options/RNA_DeNovoProtocolOptions.hh>
#include <protocols/rna/denovo/movers/RNA_DeNovoProtocolMover.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/chemical/ChemicalManager.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/EmptyPoseJobInputter.hh>
#include <protocols/jd2/RNA_DeNovoJobOutputter.hh>
#include <iostream>
#include <string>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <basic/options/keys/stepwise.OptionKeys.gen.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/Tracer.hh>

Functions
void	rna_denovo ()
void	rna_denovo_legacy ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.public.rna.denovo")

Detailed Description

Author

Rhiju Das

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cout, test.T009_Exceptions::e, basic::init(), my_main(), NEW_OPT, option, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, basic::options::OptionKeys::chemical::patch_selectors, pyrosetta.distributed.io::pose_from_pdbstring(), register_options(), and viewer_main().

my_main()

void* my_main

(

void *

)

References utility::options::OptionKeys::options::exit, option, rna_denovo(), rna_denovo_legacy(), and value.

Referenced by main().

rna_denovo()

void rna_denovo

(

)

References utility::io::oc::cout, basic::options::OptionKeys::rna::denovo::dock_chunks, basic::options::OptionKeys::in::file::fasta, basic::options::OptionKeys::rna::denovo::helical_substructs, basic::options::OptionKeys::rna::denovo::initial_structures, basic::options::OptionKeys::rna::denovo::minimize_rna, pyrosetta.distributed.docs::movers, option, beta_nonlocal::pose, basic::options::OptionKeys::in::file::residue_type_set, docking::s, basic::options::OptionKeys::relax::sequence, basic::options::OptionKeys::in::file::silent, basic::options::OptionKeys::stepwise::superimpose_over_all, basic::options::OptionKeys::inout::dbms::user, and value.

Referenced by my_main().

rna_denovo_legacy()

void rna_denovo_legacy

(

)

References utility::io::oc::cout, basic::options::OptionKeys::rna::denovo::denovo, basic::options::option, option, beta_nonlocal::pose, basic::options::OptionKeys::stepwise::superimpose_over_all, and basic::options::OptionKeys::inout::dbms::user.

Referenced by my_main().

Variable Documentation

TR

basic::Tracer TR("apps.public.rna.denovo") ( "apps.public.rna.denovo"  )

static