#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/willmatch.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/util.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/import_pose/import_pose.hh>
#include <devel/init.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/Stub.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/symmetry/SymmetricScoreFunction.hh>
#include <numeric/conversions.hh>
#include <numeric/random/random.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/xyz.io.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/scoring/ImplicitFastClashCheck.hh>
#include <sstream>
#include <utility/io/izstream.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <core/pose/init_id_map.hh>
#include <apps/pilot/will/mynamespaces.ihh>
#include <apps/pilot/will/will_util.ihh>

Functions
Real	sqr (Real const r)

Real	sigmoidish_neighbor (Real const &sqdist)

vector1< Size >	get_scanres (Pose const &pose)

void	run ()

int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("genI213")

static core::io::silent::SilentFileData	sfd

Function Documentation

◆ get_scanres()

vector1<Size> get_scanres ( Pose const & pose )

References create_a3b_hbs::i, basic::options::option, beta_nonlocal::pose, basic::options::OptionKeys::willmatch::residues, TR, and basic::options::OptionKeys::inout::dbms::user.

Referenced by run().

◆ main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), and run().

◆ run()

void run ( )

References alignaxis(), evaluate_beta_mutants::ch2, get_scanres(), basic::init(), basic::options::option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, predPRE::R2, numeric::rotation_matrix_degrees(), basic::options::OptionKeys::in::file::s, basic::options::OptionKeys::out::sf, trans_pose(), and utility_exit_with_message.

Referenced by main().

◆ sigmoidish_neighbor()

Real sigmoidish_neighbor ( Real const & sqdist )

inline

References dist(), and sqr().

◆ sqr()

Real sqr ( Real const r )

inline

References create_a3b_hbs::r.

Referenced by sigmoidish_neighbor().

Variable Documentation

◆ sfd

core::io::silent::SilentFileData sfd

static

◆ TR

basic::Tracer TR("genI213") ( "genI213" )