remap_aln.cc File Reference

#include <core/types.hh>
#include <devel/init.hh>
#include <basic/options/option.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <core/id/SequenceMapping.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/sequence/NWAligner.hh>
#include <core/sequence/SWAligner.hh>
#include <core/sequence/ScoringScheme.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/SimpleScoringScheme.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <utility/file/FileName.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/Tracer.fwd.hh>
#include <utility/excn/Exceptions.hh>

Functions
int	main (int argc, char *argv[])

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References in::file::alignment(), out::file::alignment(), cm::aln_format(), argv, utility::io::oc::cout, test.T009_Exceptions::e, end, utility::options::OptionKeys::options::exit, in::file::fasta(), basic::init(), subloop_histogram::iterator, option, bin_torsions::output, basic::options::OptionKeys::relax::sequence, and challenge::ss.