edensity Namespace Reference

Functions
BooleanOptionKey const	edensity ("edensity")
BooleanOptionKey const	debug ("edensity:debug")
StringOptionKey const	mapfile ("edensity:mapfile")
RealOptionKey const	mapreso ("edensity:mapreso")
RealOptionKey const	grid_spacing ("edensity:grid_spacing")
RealOptionKey const	centroid_density_mass ("edensity:centroid_density_mass")
IntegerOptionKey const	sliding_window ("edensity:sliding_window")
BooleanOptionKey const	cryoem_scatterers ("edensity:cryoem_scatterers")
RealOptionKey const	force_apix ("edensity:force_apix")
RealOptionKey const	fastdens_wt ("edensity:fastdens_wt")
RealVectorOptionKey const	fastdens_params ("edensity:fastdens_params")
BooleanOptionKey const	legacy_fastdens_score ("edensity:legacy_fastdens_score")
RealOptionKey const	sliding_window_wt ("edensity:sliding_window_wt")
BooleanOptionKey const	score_sliding_window_context ("edensity:score_sliding_window_context")
RealOptionKey const	whole_structure_ca_wt ("edensity:whole_structure_ca_wt")
RealOptionKey const	whole_structure_allatom_wt ("edensity:whole_structure_allatom_wt")
BooleanOptionKey const	debug_derivatives ("edensity:debug_derivatives")
StringOptionKey const	realign ("edensity:realign")
StringOptionKey const	membrane_axis ("edensity:membrane_axis")
RealOptionKey const	atom_mask ("edensity:atom_mask")
RealOptionKey const	atom_mask_min ("edensity:atom_mask_min")
RealOptionKey const	ca_mask ("edensity:ca_mask")
BooleanOptionKey const	score_symm_complex ("edensity:score_symm_complex")
RealOptionKey const	sc_scaling ("edensity:sc_scaling")
IntegerOptionKey const	n_kbins ("edensity:n_kbins")
BooleanOptionKey const	unmask_bb ("edensity:unmask_bb")
BooleanOptionKey const	render_density ("edensity:render_density")
BooleanOptionKey const	periodicity ("edensity:periodicity")

Function Documentation

atom_mask()

RealOptionKey const edensity::atom_mask

(

"edensity:atom_mask"

)

atom_mask_min()

RealOptionKey const edensity::atom_mask_min

(

"edensity:atom_mask_min"

)

ca_mask()

RealOptionKey const edensity::ca_mask

(

"edensity:ca_mask"

)

centroid_density_mass()

RealOptionKey const edensity::centroid_density_mass

(

"edensity:centroid_density_mass"

)

cryoem_scatterers()

BooleanOptionKey const edensity::cryoem_scatterers

(

"edensity:cryoem_scatterers"

)

debug()

BooleanOptionKey const edensity::debug

(

"edensity:debug"

)

debug_derivatives()

BooleanOptionKey const edensity::debug_derivatives

(

"edensity:debug_derivatives"

)

edensity()

BooleanOptionKey const edensity::edensity

(

"edensity"

)

fastdens_params()

RealVectorOptionKey const edensity::fastdens_params

(

"edensity:fastdens_params"

)

fastdens_wt()

RealOptionKey const edensity::fastdens_wt

(

"edensity:fastdens_wt"

)

force_apix()

RealOptionKey const edensity::force_apix

(

"edensity:force_apix"

)

grid_spacing()

RealOptionKey const edensity::grid_spacing

(

"edensity:grid_spacing"

)

Referenced by densityTools().

legacy_fastdens_score()

BooleanOptionKey const edensity::legacy_fastdens_score

(

"edensity:legacy_fastdens_score"

)

mapfile()

StringOptionKey const edensity::mapfile

(

"edensity:mapfile"

)

Referenced by dsRNA_grow::apply(), ElecDensMinPackMinMover::apply(), MinTestMover::apply(), byres_analysis(), densityTools(), get_res_data_ss(), main(), rebuild_test(), RelaxJobQueen::RelaxJobQueen(), res_lvl_analysis(), and RotamerAnalysis().

mapreso()

RealOptionKey const edensity::mapreso

(

"edensity:mapreso"

)

Referenced by densityTools().

membrane_axis()

StringOptionKey const edensity::membrane_axis

(

"edensity:membrane_axis"

)

n_kbins()

IntegerOptionKey const edensity::n_kbins

(

"edensity:n_kbins"

)

periodicity()

BooleanOptionKey const edensity::periodicity

(

"edensity:periodicity"

)

realign()

StringOptionKey const edensity::realign

(

"edensity:realign"

)

render_density()

BooleanOptionKey const edensity::render_density

(

"edensity:render_density"

)

sc_scaling()

RealOptionKey const edensity::sc_scaling

(

"edensity:sc_scaling"

)

score_sliding_window_context()

BooleanOptionKey const edensity::score_sliding_window_context

(

"edensity:score_sliding_window_context"

)

score_symm_complex()

BooleanOptionKey const edensity::score_symm_complex

(

"edensity:score_symm_complex"

)

sliding_window()

IntegerOptionKey const edensity::sliding_window

(

"edensity:sliding_window"

)

sliding_window_wt()

RealOptionKey const edensity::sliding_window_wt

(

"edensity:sliding_window_wt"

)

unmask_bb()

BooleanOptionKey const edensity::unmask_bb

(

"edensity:unmask_bb"

)

whole_structure_allatom_wt()

RealOptionKey const edensity::whole_structure_allatom_wt

(

"edensity:whole_structure_allatom_wt"

)

whole_structure_ca_wt()

RealOptionKey const edensity::whole_structure_ca_wt

(

"edensity:whole_structure_ca_wt"

)