RosettaHolesMover Class Reference

Inheritance diagram for RosettaHolesMover:

Public Member Functions
	RosettaHolesMover ()
void	make_pdb (bool make_pdb)
bool	make_pdb () const
void	atom_scores (bool atom_scores)
bool	atom_scores () const
void	residue_scores (bool residue_scores)
bool	residue_scores () const
void	apply (core::pose::Pose &pose) override
std::string	get_name () const override
	RosettaHolesMover ()
void	make_pdb (bool make_pdb)
bool	make_pdb () const
void	atom_scores (bool atom_scores)
bool	atom_scores () const
void	residue_scores (bool residue_scores)
bool	residue_scores () const
void	apply (core::pose::Pose &pose)
std::string	get_name () const

Private Attributes
core::scoring::packing::HolesParams	hp_resl_
core::scoring::packing::HolesParams	hp_dec_
core::scoring::packing::HolesParams	hp_dec15_
bool	make_pdb_
bool	make_voids_
bool	atom_scores_
bool	residue_scores_
core::scoring::ScoreFunctionOP	sf_

Constructor & Destructor Documentation

RosettaHolesMover() [1/2]

RosettaHolesMover::RosettaHolesMover ( )

inline

References basic::options::OptionKeys::holes::atom_scores, basic::database::full_name(), basic::options::OptionKeys::holes::make_pdb, basic::options::OptionKeys::holes::make_voids, basic::options::OptionKeys::in::file::native, basic::options::option, basic::options::OptionKeys::holes::residue_scores, TR, and basic::options::OptionKeys::inout::dbms::user.

RosettaHolesMover() [2/2]

RosettaHolesMover::RosettaHolesMover ( )

inline

References basic::options::OptionKeys::holes::atom_scores, basic::database::full_name(), basic::options::OptionKeys::holes::make_pdb, basic::options::OptionKeys::holes::make_voids, basic::options::OptionKeys::in::file::native, basic::options::option, basic::options::OptionKeys::holes::residue_scores, TR, and basic::options::OptionKeys::inout::dbms::user.

Member Function Documentation

apply() [1/2]

void RosettaHolesMover::apply ( core::pose::Pose &  pose )

inline

References ObjexxFCL::format::F(), utility::file::file_basename(), PREcst::fname, surface_app::native, basic::options::OptionKeys::out::file::o, basic::options::option, erraser_single_res_analysis::out, output_packstat_pdb(), kic_runner::pdb, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, ObjexxFCL::format::RJ(), loops_kic::rms, basic::options::OptionKeys::frags::scoring::scoring, tag_from_pose(), TR, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

apply() [2/2]

void RosettaHolesMover::apply ( core::pose::Pose &  pose )

inlineoverride

References ObjexxFCL::format::F(), utility::file::file_basename(), PREcst::fname, create_a3b_hbs::i, test.T110_numeric::I, create_a3b_hbs::j, max(), surface_app::native, basic::options::OptionKeys::out::file::o, basic::options::option, erraser_single_res_analysis::out, output_packstat_pdb(), beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, ObjexxFCL::format::RJ(), loops_kic::rms, basic::options::OptionKeys::frags::scoring::scoring, tag_from_pose(), TR, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

atom_scores() [1/4]

bool RosettaHolesMover::atom_scores ( ) const

inline

atom_scores() [2/4]

bool RosettaHolesMover::atom_scores ( ) const

inline

atom_scores() [3/4]

void RosettaHolesMover::atom_scores ( bool  atom_scores )

inline

References atom_scores().

Referenced by atom_scores().

atom_scores() [4/4]

void RosettaHolesMover::atom_scores ( bool  atom_scores )

inline

References atom_scores().

Referenced by atom_scores().

get_name() [1/2]

std::string RosettaHolesMover::get_name ( ) const

inline

get_name() [2/2]

std::string RosettaHolesMover::get_name ( ) const

inlineoverride

make_pdb() [1/4]

bool RosettaHolesMover::make_pdb ( ) const

inline

make_pdb() [2/4]

bool RosettaHolesMover::make_pdb ( ) const

inline

make_pdb() [3/4]

void RosettaHolesMover::make_pdb ( bool  make_pdb )

inline

References make_pdb().

Referenced by make_pdb().

make_pdb() [4/4]

void RosettaHolesMover::make_pdb ( bool  make_pdb )

inline

References make_pdb().

Referenced by make_pdb().

residue_scores() [1/4]

bool RosettaHolesMover::residue_scores ( ) const

inline

residue_scores() [2/4]

bool RosettaHolesMover::residue_scores ( ) const

inline

residue_scores() [3/4]

void RosettaHolesMover::residue_scores ( bool  residue_scores )

inline

References residue_scores().

Referenced by residue_scores().

residue_scores() [4/4]

void RosettaHolesMover::residue_scores ( bool  residue_scores )

inline

References residue_scores().

Referenced by residue_scores().

Member Data Documentation

atom_scores_

bool RosettaHolesMover::atom_scores_

private

hp_dec15_

core::scoring::packing::HolesParams RosettaHolesMover::hp_dec15_

private

hp_dec_

core::scoring::packing::HolesParams RosettaHolesMover::hp_dec_

private

hp_resl_

core::scoring::packing::HolesParams RosettaHolesMover::hp_resl_

private

make_pdb_

bool RosettaHolesMover::make_pdb_

private

make_voids_

bool RosettaHolesMover::make_voids_

private

residue_scores_

bool RosettaHolesMover::residue_scores_

private

sf_

core::scoring::ScoreFunctionOP RosettaHolesMover::sf_

private

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The documentation for this class was generated from the following files:

• src/apps/pilot/will/holes.cc
• src/apps/pilot/will/old/holes_test.cc