Svm.hh File Reference

Classes
struct	svm_node
struct	svm_problem
struct	svm_parameter
struct	svm_model

Macros
#define	LIBSVM_VERSION   314

Enumerations
enum	{   C_SVC , NU_SVC , ONE_CLASS , EPSILON_SVR ,   NU_SVR }
enum	{   LINEAR , POLY , RBF , SIGMOID ,   PRECOMPUTED }

Functions
struct svm_model *	svm_train (const struct svm_problem *prob, const struct svm_parameter *param)
void	svm_cross_validation (const struct svm_problem *prob, const struct svm_parameter *param, int nr_fold, double *target)
int	svm_save_model (const char *model_file_name, const struct svm_model *model)
struct svm_model *	svm_load_model (const char *model_file_name)
int	svm_get_svm_type (const struct svm_model *model)
int	svm_get_nr_class (const struct svm_model *model)
void	svm_get_labels (const struct svm_model *model, int *label)
void	svm_get_sv_indices (const struct svm_model *model, int *sv_indices)
int	svm_get_nr_sv (const struct svm_model *model)
double	svm_get_svr_probability (const struct svm_model *model)
double	svm_predict_values (const struct svm_model *model, const struct svm_node *x, double *dec_values)
double	svm_predict (const struct svm_model *model, const struct svm_node *x)
double	svm_predict_probability (const struct svm_model *model, const struct svm_node *x, double *prob_estimates)
void	svm_free_model_content (struct svm_model *model_ptr)
void	svm_free_and_destroy_model (struct svm_model **model_ptr_ptr)
void	svm_destroy_param (struct svm_parameter *param)
const char *	svm_check_parameter (const struct svm_problem *prob, const struct svm_parameter *param)
int	svm_check_probability_model (const struct svm_model *model)
void	svm_set_print_string_function (void(*print_func)(const char *))

Variables
int	libsvm_version

Macro Definition Documentation

LIBSVM_VERSION

#define LIBSVM_VERSION   314

Enumeration Type Documentation

anonymous enum

anonymous enum

Enumerator
C_SVC
NU_SVC
ONE_CLASS
EPSILON_SVR
NU_SVR

anonymous enum

anonymous enum

Enumerator
LINEAR
POLY
RBF
SIGMOID
PRECOMPUTED

Function Documentation

svm_check_parameter()

const char* svm_check_parameter	(	const struct svm_problem *	prob,
		const struct svm_parameter *	param
	)

svm_check_probability_model()

int svm_check_probability_model

(

const struct svm_model *

model

)

svm_cross_validation()

void svm_cross_validation	(	const struct svm_problem *	prob,
		const struct svm_parameter *	param,
		int	nr_fold,
		double *	target
	)

svm_destroy_param()

void svm_destroy_param

(

struct svm_parameter *

param

)

References free(), and PREcst::param.

Referenced by svm_binary_svc_probability().

svm_free_and_destroy_model()

void svm_free_and_destroy_model

(

struct svm_model **

model_ptr_ptr

)

References free(), and svm_free_model_content().

Referenced by svm_binary_svc_probability(), and svm_cross_validation().

svm_free_model_content()

void svm_free_model_content

(

struct svm_model *

model_ptr

)

References free(), svm_model::free_sv, create_a3b_hbs::i, svm_model::l, svm_model::label, svm_model::nr_class, svm_model::nSV, svm_model::probA, svm_model::probB, svm_model::rho, svm_model::SV, and svm_model::sv_coef.

Referenced by svm_free_and_destroy_model(), and utility::libsvm::Svm_rosetta::~Svm_rosetta().

svm_get_labels()

void svm_get_labels	(	const struct svm_model *	model,
		int *	label
	)

svm_get_nr_class()

int svm_get_nr_class

(

const struct svm_model *

model

)

svm_get_nr_sv()

int svm_get_nr_sv

(

const struct svm_model *

model

)

svm_get_sv_indices()

void svm_get_sv_indices	(	const struct svm_model *	model,
		int *	sv_indices
	)

svm_get_svm_type()

int svm_get_svm_type

(

const struct svm_model *

model

)

svm_get_svr_probability()

double svm_get_svr_probability

(

const struct svm_model *

model

)

svm_load_model()

struct svm_model* svm_load_model

(

const char *

model_file_name

)

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, utility::io::oc::cout, fclose(), PREcst::FILE, evaluate_beta_mutants::fp, fprintf(), free(), create_a3b_hbs::i, kmeans_adaptive_kernel_density_bb_dependent_rotlib::idx, svm_node::index, enumerate_junctions::int, create_a3b_hbs::j, create_a3b_hbs::k, kernel_type_table, extract_by_sidechain_sasa_score::l, line, kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, Malloc, max_line_len, closure_error::model, basic::options::OptionKeys::legacy_sewing::model_file_name, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, PREcst::param, make_symmdef_file_denovo::pos, readline(), svm_type_table, and svm_node::value.

Referenced by utility::libsvm::Svm_rosetta::Svm_rosetta().

svm_predict()

double svm_predict	(	const struct svm_model *	model,
		const struct svm_node *	x
	)

svm_predict_probability()

double svm_predict_probability	(	const struct svm_model *	model,
		const struct svm_node *	x,
		double *	prob_estimates
	)

svm_predict_values()

double svm_predict_values	(	const struct svm_model *	model,
		const struct svm_node *	x,
		double *	dec_values
	)

svm_save_model()

int svm_save_model	(	const char *	model_file_name,
		const struct svm_model *	model
	)

svm_set_print_string_function()

void svm_set_print_string_function

(

void(*)(const char *)

print_func

)

References print_string_stdout(), and svm_print_string.

svm_train()

struct svm_model* svm_train	(	const struct svm_problem *	prob,
		const struct svm_parameter *	param
	)

Variable Documentation

libsvm_version

int libsvm_version

extern