compare_features.cc File Reference

#include <devel/init.hh>
#include <core/types.hh>
#include <core/chemical/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <core/import_pose/pose_stream/PoseInputStream.hh>
#include <core/import_pose/pose_stream/PoseInputStream.fwd.hh>
#include <core/import_pose/pose_stream/MetaPoseInputStream.hh>
#include <core/scoring/rms_util.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <basic/prof.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Residue.hh>
#include <utility/vector1.hh>
#include <boost/dynamic_bitset.hpp>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <algorithm>
#include <utility/excn/Exceptions.hh>

Functions
boost::dynamic_bitset	get_dm_features (core::pose::Pose &pose, core::Real const dist_threshold, std::string const &atom_name, core::Size const min_seqsep=12, core::Size const skip_res=0)
std::string	dynamic_bitset_to_hex_string (boost::dynamic_bitset<> const &bits)
core::Real	pct_features_in_common (boost::dynamic_bitset<> const &set1, boost::dynamic_bitset<> const &set2)
int	main (int argc, char *argv[])

Detailed Description

Author

James Thompson

Function Documentation

dynamic_bitset_to_hex_string()

std::string dynamic_bitset_to_hex_string

(

boost::dynamic_bitset<> const &

bits

)

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::idx, create_a3b_hbs::ii, and str().

get_dm_features()

boost::dynamic_bitset get_dm_features	(	core::pose::Pose &	pose,
		core::Real const	dist_threshold,
		std::string const &	atom_name,
		core::Size const	min_seqsep = 12,
		core::Size const	skip_res = 0
	)

References create_a3b_hbs::ii, beta_nonlocal::jj, basic::options::OptionKeys::james::min_seqsep, N, and beta_nonlocal::pose.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::chemical::chemical, bin_torsions::counts, utility::io::oc::cout, test.T009_Exceptions::e, get_dm_features(), basic::init(), gaussian-sampling::input, in::file::native(), surface_app::native, option, pct_features_in_common(), beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, basic::prof_show(), PROF_START, PROF_STOP, basic::options::OptionKeys::in::file::silent, basic::STAGE1, basic::STAGE2, and basic::STAGE3.

pct_features_in_common()

core::Real pct_features_in_common	(	boost::dynamic_bitset<> const &	set1,
		boost::dynamic_bitset<> const &	set2
	)

References dist().

Referenced by main().