#include <core/types.hh>
#include <devel/init.hh>
#include <core/chemical/AA.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/pose/Pose.hh>
#include <core/kinematics/RT.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/robert.OptionKeys.gen.hh>
#include <core/conformation/Conformation.fwd.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Atom.hh>
#include <utility/vector1.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/file/FileName.hh>
#include <ObjexxFCL/char.functions.hh>
#include <ObjexxFCL/string.functions.hh>
#include <ObjexxFCL/FArray2A.hh>
#include <ObjexxFCL/FArray2A.fwd.hh>
#include <numeric/random/random.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/xyzMatrix.fwd.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <core/import_pose/import_pose.hh>
#include <protocols/jumping/StrandPairing.hh>
#include <numeric/xyz.functions.hh>
#include <ObjexxFCL/format.hh>

Functions
void	get_coordinate_system (numeric::xyzMatrix_double const &p, numeric::xyzMatrix_double &m)

void	get_ncac (FArray2A_float pos, numeric::xyzMatrix_double &p)

numeric::xyzMatrix_double	get_ncac (FArray2A_float pos)

RT	RT_from_epos (FArray2A_float Epos1, FArray2A_float Epos2)

int	main (int argc, char *argv[])

Function Documentation

◆ get_coordinate_system()

void get_coordinate_system	(	numeric::xyzMatrix_double const &	p,
		numeric::xyzMatrix_double &	m
	)

References docking::a1, docking::a2, docking::a3, cols(), measure_params::cross(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, and kmeans_adaptive_kernel_density_bb_dependent_rotlib::p.

Referenced by RT_from_epos().

◆ get_ncac() [1/2]

numeric::xyzMatrix_double get_ncac ( FArray2A_float pos )

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, cols(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, and make_symmdef_file_denovo::pos.

◆ get_ncac() [2/2]

void get_ncac	(	FArray2A_float	pos,
		numeric::xyzMatrix_double &	p
	)

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, cols(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, and make_symmdef_file_denovo::pos.

Referenced by RT_from_epos().

◆ main()

int main	(	int	argc,
		char *	argv[]
	)

References ObjexxFCL::abs(), argv, utility::io::oc::cout, basic::options::OptionKeys::in::file::dssp, test.T009_Exceptions::e, utility::io::izstream::good(), basic::init(), option, lactamize::outfile, robert::pairdata_input_pdb_list(), kic_runner::pdb, pyrosetta.distributed.io::pose_from_file, erraser_analysis::res1, erraser_analysis::res2, and RT_from_epos().

◆ RT_from_epos()

RT RT_from_epos	(	FArray2A_float	Epos1,
		FArray2A_float	Epos2
	)

References get_coordinate_system(), get_ncac(), p2, 3d_histogram::rotation, basic::options::OptionKeys::rigid::translation, and numeric::xyzMatrix< T >::transposed().