extend.cc File Reference

#include <string>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <devel/init.hh>
#include <core/types.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/util.hh>
#include <core/id/AtomID.hh>
#include <core/import_pose/import_pose.hh>
#include <core/kinematics/Edge.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/rms_util.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <protocols/loops/Loop.hh>

Functions
void	generate_extended_pose (Pose *extended_pose, const std::string &sequence)
void	copy_residues (const Pose &src, Size start, Size stop, Pose *dst)
int	main (int argc, char *argv[])

Function Documentation

copy_residues()

void copy_residues	(	const Pose &	src,
		Size	start,
		Size	stop,
		Pose *	dst
	)

References create_a3b_hbs::i, create_a3b_hbs::j, create_a3b_hbs::r, and basic::options::OptionKeys::cutoutdomain::start.

Referenced by main().

generate_extended_pose()

void generate_extended_pose	(	Pose *	extended_pose,
		const std::string &	sequence
	)

References basic::options::OptionKeys::in::file::extended_pose, create_a3b_hbs::i, and basic::options::OptionKeys::relax::sequence.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, copy_residues(), test.T009_Exceptions::e, vancomycin::f2, generate_extended_pose(), basic::init(), basic::options::OptionKeys::in::file::native, basic::options::option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, and closure_error::reference.