util Namespace Reference

Functions
def	read_pdb (filename)
def	make_tag_with_dashes (int_vector, char_vector=0)
def	get_surrounding_res (pdbfile, sample_res_list=[], radius=None, verbose=False, keep_res=[])
def	parse_tag (tag, alpha_sort=False)

Function Documentation

get_surrounding_res()

def util.get_surrounding_res	(		pdbfile,
			sample_res_list = [],
			radius = None,
			verbose = False,
			keep_res = []
	)

References basic::options::OptionKeys::stepwise.enumerate, run_backbone.float, ObjexxFCL.len(), parse_tag(), print(), read_pdb(), str(), numeric.subtract(), and sum().

Referenced by mutant_modeler.MutantModeler.get_high_res_command_lines().

make_tag_with_dashes()

def util.make_tag_with_dashes	(		int_vector,
			char_vector = 0
	)

References ObjexxFCL.len(), and range.

parse_tag()

def util.parse_tag	(		tag,
			alpha_sort = False
	)

References enumerate_junctions.int, ObjexxFCL.len(), basic::options::OptionKeys::in::file.list, str(), and basic::options::OptionKeys::in::file.zip.

Referenced by get_surrounding_res().

read_pdb()

def util.read_pdb

(

filename

)

References run_backbone.float, enumerate_junctions.int, ObjexxFCL.len(), and basic::database.open().

Referenced by get_surrounding_res().