quotapicker_demo.cc File Reference

#include <devel/init.hh>
#include <core/sequence/Sequence.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/frags.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <core/fragment/picking/FragmentPicker.hh>
#include <core/fragment/picking/VallProvider.hh>
#include <core/fragment/picking/VallChunk.hh>
#include <core/fragment/picking/VallResidue.hh>
#include <core/fragment/picking/FragmentCandidate.hh>
#include <core/fragment/picking/FragmentSelectingRule.hh>
#include <core/fragment/picking/VallChunkFilter.hh>
#include <core/fragment/picking/BoundedCollector.hh>
#include <core/fragment/picking/BestTotalScoreSelector.hh>
#include <core/fragment/picking/PdbIdChunkFilter.hh>
#include <core/fragment/picking/scores/FragmentScoringMethod.hh>
#include <core/fragment/picking/scores/ProfileScoreL1.hh>
#include <core/fragment/picking/scores/SecondarySimilarity.hh>
#include <core/fragment/picking/scores/FragmentScoreManager.hh>
#include <core/fragment/picking/scores/RamaScore.hh>
#include <utility>
#include <core/fragment/picking/quota/QuotaCollector.hh>
#include <core/fragment/picking/quota/QuotaPool.hh>
#include <core/fragment/picking/quota/ABEGO_SS_Pool.hh>
#include <core/fragment/picking/quota/ABEGO_SS_Config.hh>
#include <utility/io/mpistream.hh>
#include <boost/tokenizer.hpp>
#include <boost/lexical_cast.hpp>
#include <utility/excn/Exceptions.hh>

Functions
void	register_options ()
void	attach_abego_pools (FragmentPickerOP picker, Size n_candidates_)
void	attach_simple_abego_pools (FragmentPickerOP picker, Size n_candidates_, std::string ss1, std::string abego1, Real f1, std::string ss2, std::string abego2, Real f2, std::string ss3, std::string abego3, Real f3)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	trace ("quotapicker_demo")

Function Documentation

attach_abego_pools()

void attach_abego_pools	(	FragmentPickerOP	picker,
		Size	n_candidates_
	)

References create_a3b_hbs::f, create_a3b_hbs::i, basic::Tracer::Info, create_a3b_hbs::j, extract_by_sidechain_sasa_score::l, option, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, basic::options::OptionKeys::frags::picking::quota_config_file, basic::options::OptionKeys::stepwise::s1, basic::options::OptionKeys::stepwise::s2, basic::options::OptionKeys::ddg::score_cutoff, in::file::torsion_bin_probs(), trace, basic::options::OptionKeys::inout::dbms::user, and weights().

Referenced by main().

attach_simple_abego_pools()

void attach_simple_abego_pools	(	FragmentPickerOP	picker,
		Size	n_candidates_,
		std::string	ss1,
		std::string	abego1,
		Real	f1,
		std::string	ss2,
		std::string	abego2,
		Real	f2,
		std::string	ss3,
		std::string	abego3,
		Real	f3
	)

References create_a3b_hbs::f, vancomycin::f2, create_a3b_hbs::i, basic::Tracer::Info, create_a3b_hbs::j, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, basic::options::OptionKeys::stepwise::s1, basic::options::OptionKeys::stepwise::s2, basic::options::OptionKeys::mh::match::ss1, basic::options::OptionKeys::mh::match::ss2, trace, basic::Tracer::Trace, and weights().

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References frags::allowed_pdb(), argv, attach_abego_pools(), attach_simple_abego_pools(), in::file::checkpoint(), basic::options::OptionKeys::nonlocal::chunks, frags::scoring::config(), frags::denied_pdb(), test.T009_Exceptions::e, basic::Tracer::Info, basic::init(), subloop_histogram::iterator, frags::n_candidates(), frags::n_frags(), option, frags::picking::query_pos(), register_options(), basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::sc::sep, basic::options::OptionKeys::relax::sequence, frags::ss_pred(), predPRE::t, trace, basic::options::OptionKeys::inout::dbms::user, and in::file::vall().

register_options()

void register_options

(

)

References frags::allowed_pdb(), in::file::checkpoint(), frags::scoring::config(), constraints::cst_file(), in::path::database(), frags::denied_pdb(), in::file::native(), NEW_OPT, OPT, in::file::psipred_ss2(), frags::picking::query_pos(), frags::ss_pred(), and in::file::torsion_bin_probs().

Referenced by main().

Variable Documentation

trace

basic::Tracer trace("quotapicker_demo") ( "quotapicker_demo"  )

static

Referenced by attach_abego_pools(), attach_simple_abego_pools(), and main().