SymmAbrelax.cc File Reference

#include <protocols/viewer/viewers.hh>
#include <core/conformation/symmetry/util.hh>
#include <protocols/fibril/fibril_util.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/symmetry/SymmetricScoreFunction.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <protocols/loops/loops_main.hh>
#include <basic/options/util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/abinitio.OptionKeys.gen.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <devel/init.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/abinitio/ClassicAbinitio.hh>
#include <protocols/symmetric_docking/SymDockingLowRes.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/conformation/Conformation.hh>
#include <core/fragment/FragSet.hh>
#include <core/import_pose/import_pose.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <protocols/jobdist/Jobs.hh>
#include <protocols/jumping/JumpSetup.fwd.hh>
#include <utility/io/mpistream.hh>
#include <utility/excn/Exceptions.hh>

Functions
void	setup_for_folding (core::pose::Pose &pose, ProtocolOP &prot_ptr)
core::kinematics::Jump	get_jump (Pose const &native_pose, core::Size const &res1, core::Size const &res2)
void	SymmAbRelaxTest ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.lin.symmabrelax")

Function Documentation

get_jump()

core::kinematics::Jump get_jump	(	Pose const &	native_pose,
		core::Size const &	res1,
		core::Size const &	res2
	)

References docking::a1, docking::a2, docking::a3, docking::b1, docking::b2, docking::b3, docking::native_pose, erraser_analysis::res1, and erraser_analysis::res2.

Referenced by SymmAbRelaxTest().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), my_main(), and viewer_main().

my_main()

void* my_main

(

void *

)

References SymmAbRelaxTest().

Referenced by main().

setup_for_folding()

void setup_for_folding	(	core::pose::Pose &	pose,
		ProtocolOP &	prot_ptr
	)

References in::file::frag3(), in::file::frag9(), in::file::fragA(), in::file::fragB(), create_a3b_hbs::i, basic::options::OptionKeys::in::file::movemap, basic::options::OptionKeys::abinitio::number_3mer_frags, basic::options::OptionKeys::abinitio::number_9mer_frags, option, beta_nonlocal::pose, register_options(), and basic::options::OptionKeys::inout::dbms::user.

Referenced by SymmAbRelaxTest().

SymmAbRelaxTest()

void SymmAbRelaxTest

(

)

References utility::io::oc::cout, pyrosetta::create_score_function, basic::options::OptionKeys::in::file::extended_pose, in::file::fasta(), get_jump(), create_a3b_hbs::i, option, make_symmdef_file_denovo::pos, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::in::file::psipred_ss2, basic::options::OptionKeys::in::file::residue_type_set, oop_conformations::scorefxn, basic::options::OptionKeys::relax::sequence, set_secstruct_from_psipred_ss2(), setup_for_folding(), basic::options::start_file(), loops_kic::success, basic::options::OptionKeys::symmetry::symmetry, TR, and basic::options::OptionKeys::inout::dbms::user.

Referenced by my_main().

Variable Documentation

TR

basic::Tracer TR("apps.pilot.lin.symmabrelax") ( "apps.pilot.lin.symmabrelax"  )

static

Referenced by SymmAbRelaxTest().