backrub Namespace Reference

Functions
BooleanOptionKey const	backrub ("backrub")
IntegerVectorOptionKey const	pivot_residues ("backrub:pivot_residues")
StringVectorOptionKey const	pivot_atoms ("backrub:pivot_atoms")
IntegerOptionKey const	min_atoms ("backrub:min_atoms")
IntegerOptionKey const	max_atoms ("backrub:max_atoms")
IntegerOptionKey const	ntrials ("backrub:ntrials")
RealOptionKey const	sc_prob ("backrub:sc_prob")
RealOptionKey const	sm_prob ("backrub:sm_prob")
RealOptionKey const	sc_prob_uniform ("backrub:sc_prob_uniform")
RealOptionKey const	sc_prob_withinrot ("backrub:sc_prob_withinrot")
RealOptionKey const	mc_kt ("backrub:mc_kt")
RealOptionKey const	mm_bend_weight ("backrub:mm_bend_weight")
BooleanOptionKey const	initial_pack ("backrub:initial_pack")
FileOptionKey const	minimize_movemap ("backrub:minimize_movemap")
BooleanOptionKey const	trajectory ("backrub:trajectory")
BooleanOptionKey const	trajectory_gz ("backrub:trajectory_gz")
IntegerOptionKey const	trajectory_stride ("backrub:trajectory_stride")

Function Documentation

backrub()

BooleanOptionKey const backrub::backrub

(

"backrub"

)

initial_pack()

BooleanOptionKey const backrub::initial_pack

(

"backrub:initial_pack"

)

Referenced by main().

max_atoms()

IntegerOptionKey const backrub::max_atoms

(

"backrub:max_atoms"

)

Referenced by backrub_protocol(), and main().

mc_kt()

RealOptionKey const backrub::mc_kt

(

"backrub:mc_kt"

)

Referenced by backrub_protocol(), and main().

min_atoms()

IntegerOptionKey const backrub::min_atoms

(

"backrub:min_atoms"

)

Referenced by backrub_protocol(), and main().

minimize_movemap()

FileOptionKey const backrub::minimize_movemap

(

"backrub:minimize_movemap"

)

Referenced by main().

mm_bend_weight()

RealOptionKey const backrub::mm_bend_weight

(

"backrub:mm_bend_weight"

)

Referenced by backrub_protocol(), and main().

ntrials()

IntegerOptionKey const backrub::ntrials

(

"backrub:ntrials"

)

Referenced by backrub_protocol(), and main().

pivot_atoms()

StringVectorOptionKey const backrub::pivot_atoms

(

"backrub:pivot_atoms"

)

Referenced by backrub_protocol(), main(), and my_main().

pivot_residues()

IntegerVectorOptionKey const backrub::pivot_residues

(

"backrub:pivot_residues"

)

Referenced by backrub_protocol(), and main().

sc_prob()

RealOptionKey const backrub::sc_prob

(

"backrub:sc_prob"

)

Referenced by backrub_protocol(), and main().

sc_prob_uniform()

RealOptionKey const backrub::sc_prob_uniform

(

"backrub:sc_prob_uniform"

)

Referenced by backrub_protocol(), and main().

sc_prob_withinrot()

RealOptionKey const backrub::sc_prob_withinrot

(

"backrub:sc_prob_withinrot"

)

Referenced by main().

sm_prob()

RealOptionKey const backrub::sm_prob

(

"backrub:sm_prob"

)

Referenced by main().

trajectory()

BooleanOptionKey const backrub::trajectory

(

"backrub:trajectory"

)

Referenced by main().

trajectory_gz()

BooleanOptionKey const backrub::trajectory_gz

(

"backrub:trajectory_gz"

)

Referenced by main().

trajectory_stride()

IntegerOptionKey const backrub::trajectory_stride

(

"backrub:trajectory_stride"

)

Referenced by main().