template_features.cc File Reference

#include <ObjexxFCL/format.hh>
#include <utility/vector1.hh>
#include <devel/init.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/sequence/util.hh>
#include <protocols/comparative_modeling/util.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/conformation/Residue.hh>
#include <basic/Tracer.hh>
#include <iostream>
#include <string>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <basic/options/keys/james.OptionKeys.gen.hh>
#include <core/import_pose/pose_stream/PoseInputStream.fwd.hh>
#include <utility/excn/Exceptions.hh>

Functions
utility::vector1< int >	calculate_burial (core::pose::Pose &mypose, core::Real const dist_cutoff)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.public.comparative_modeling.thread_local")

Function Documentation

calculate_burial()

utility::vector1< int > calculate_burial	(	core::pose::Pose &	mypose,
		core::Real const	dist_cutoff
	)

References basic::options::OptionKeys::in::file::burial, dist(), dist_cutoff, create_a3b_hbs::i, create_a3b_hbs::j, pna::resi, and basic::options::OptionKeys::cmiles::jumping::resj.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib::A, basic::options::OptionKeys::in::file::alignment, aln, basic::options::OptionKeys::cm::aln_format, argv, basic::options::OptionKeys::in::file::burial, calculate_burial(), basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, dist_cutoff, basic::options::OptionKeys::james::dist_thresholds, build_jacobian::distance, test.T009_Exceptions::e, basic::Tracer::Error, ObjexxFCL::format::F(), test.T110_numeric::I, create_a3b_hbs::ii, basic::init(), beta_nonlocal::jj, kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, max(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, basic::options::option, bin_torsions::output, beta_nonlocal::pose, basic::options::OptionKeys::mp::assembly::poses, poses_from_cmd_line(), pna::resi, basic::options::OptionKeys::cmiles::jumping::resj, basic::options::OptionKeys::relax::sequence, basic::options::OptionKeys::in::file::template_pdb, basic::options::TR, basic::options::OptionKeys::inout::dbms::user, and basic::options::OptionKeys::mp::visualize::width.

Variable Documentation

TR

basic::Tracer TR("apps.public.comparative_modeling.thread_local") ( "apps.public.comparative_modeling.thread_local"  )

static