app_runner Namespace Reference

Variables
	parser = argparse.ArgumentParser()
	default
	action
	type
	int
	float
	nargs
	arguments = parser.parse_args()
	options = copy.deepcopy(arguments)
	weights
	build_flags
	execute_flags
string	command
	shell

Variable Documentation

action

app_runner.action

arguments

app_runner.arguments = parser.parse_args()

build_flags

app_runner.build_flags

command

string app_runner.command

Initial value:

=  '''\
    rosetta_build --build=mpi && \\
    rosetta_execute native_ensemble -v -- \\
        -out:use_database \\
        -inout:dbms:mode mysql \\
        -inout:dbms:database_name kale \\
        -inout:dbms:user kale \\
        -inout:dbms:port 3306 \\
        -inout:dbms:password $(abraxas mysql) \\
        -inout:dbms:host guybrush.ucsf.edu \\
        -s structures/benchmark/154l.pdb \\
        -native_ensemble:loop 153 164 \\
        -native_ensemble:weights {0.weights} \\
        -native_ensemble:algorithm {0.algorithm} \\
        -native_ensemble:iterations {0.iterations} \\
        -native_ensemble:frequency {0.frequency} \\
        -native_ensemble:message "'{0.message}'"
    '''.format(options)

default

app_runner.default

execute_flags

app_runner.execute_flags

float

app_runner.float

int

app_runner.int

nargs

app_runner.nargs

options

app_runner.options = copy.deepcopy(arguments)

parser

app_runner.parser = argparse.ArgumentParser()

shell

app_runner.shell

type

app_runner.type

weights

app_runner.weights