membrane_foldtree2.cc File Reference

#include <devel/init.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/util.hh>
#include <core/membrane/MembraneConformation.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <utility/VirtualBase.hh>
#include <cstdlib>
#include <string>
#include <cmath>

Functions
core::pose::PoseOP	load_pose ()
	Load Membrane Pose. More...
void	add_vrts (core::pose::PoseOP pose)
	Add Membrane and Embedding virtual residues. More...
void	modify_foldtree (core::pose::PoseOP pose)
	Modify the current fold tree topology. More...
int	main (int argc, char *argv[])
	Main Function. More...

Variables
static basic::Tracer	TR ("apps.pilot.ralford.membrane_foldtree")

Function Documentation

add_vrts()

void add_vrts

(

core::pose::PoseOP

pose

)

Add Membrane and Embedding virtual residues.

References center, basic::options::OptionKeys::chemical::chemical, basic::options::OptionKeys::frags::depth, normal, beta_nonlocal::pose, basic::options::OptionKeys::in::file::residue_type_set, and TR.

Referenced by main().

load_pose()

core::pose::PoseOP load_pose

(

)

Load Membrane Pose.

References beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, and TR.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

Main Function.

References add_vrts(), argv, test.T009_Exceptions::e, basic::init(), load_pose(), modify_foldtree(), beta_nonlocal::pose, and TR.

modify_foldtree()

void modify_foldtree

(

core::pose::PoseOP

pose

)

Modify the current fold tree topology.

References basic::options::OptionKeys::abinitio::membrane, beta_nonlocal::pose, and TR.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("apps.pilot.ralford.membrane_foldtree") ( "apps.pilot.ralford.membrane_foldtree"  )

static

Referenced by add_vrts(), load_pose(), main(), and modify_foldtree().