carbohydrates::glycopeptide_docking Namespace Reference

Functions
BooleanOptionKey const	glycopeptide_docking ("carbohydrates:glycopeptide_docking")
StringOptionKey const	residue_to_glycosylate ("carbohydrates:glycopeptide_docking:residue_to_glycosylate")
StringOptionKey const	anchor_residue ("carbohydrates:glycopeptide_docking:anchor_residue")
BooleanOptionKey const	low_res ("carbohydrates:glycopeptide_docking:low_res")
IntegerOptionKey const	high_res_outer_cycles ("carbohydrates:glycopeptide_docking:high_res_outer_cycles")
IntegerOptionKey const	low_res_outer_cycles ("carbohydrates:glycopeptide_docking:low_res_outer_cycles")
IntegerOptionKey const	low_res_inner_cycles ("carbohydrates:glycopeptide_docking:low_res_inner_cycles")
BooleanOptionKey const	high_res ("carbohydrates:glycopeptide_docking:high_res")
StringOptionKey const	substrate_type ("carbohydrates:glycopeptide_docking:substrate_type")
StringOptionKey const	tree_type ("carbohydrates:glycopeptide_docking:tree_type")
BooleanOptionKey const	randomize_substrate_torsions ("carbohydrates:glycopeptide_docking:randomize_substrate_torsions")
BooleanOptionKey const	enable_backbone_moves_pp ("carbohydrates:glycopeptide_docking:enable_backbone_moves_pp")
BooleanOptionKey const	prevent_anchor_repacking ("carbohydrates:glycopeptide_docking:prevent_anchor_repacking")
StringOptionKey const	sugardonor_residue ("carbohydrates:glycopeptide_docking:sugardonor_residue")
BooleanOptionKey const	output_debug_pdbs ("carbohydrates:glycopeptide_docking:output_debug_pdbs")
BooleanOptionKey const	fix_weights ("carbohydrates:glycopeptide_docking:fix_weights")
StringOptionKey const	nevery_interface ("carbohydrates:glycopeptide_docking:nevery_interface")
StringOptionKey const	ntotal_backbone ("carbohydrates:glycopeptide_docking:ntotal_backbone")
BooleanOptionKey const	allow_glycan_torsion_moves ("carbohydrates:glycopeptide_docking:allow_glycan_torsion_moves")
RealOptionKey const	interface_distance ("carbohydrates:glycopeptide_docking:interface_distance")
BooleanOptionKey const	score_only ("carbohydrates:glycopeptide_docking:score_only")
BooleanOptionKey const	output_distance_metrics ("carbohydrates:glycopeptide_docking:output_distance_metrics")
StringOptionKey const	preglycosylate_residues ("carbohydrates:glycopeptide_docking:preglycosylate_residues")
StringOptionKey const	preglycosylate_sugar_names ("carbohydrates:glycopeptide_docking:preglycosylate_sugar_names")

Function Documentation

allow_glycan_torsion_moves()

BooleanOptionKey const carbohydrates::glycopeptide_docking::allow_glycan_torsion_moves

(

"carbohydrates:glycopeptide_docking:allow_glycan_torsion_moves"

)

References glycopeptide_docking().

anchor_residue()

StringOptionKey const carbohydrates::glycopeptide_docking::anchor_residue

(

"carbohydrates:glycopeptide_docking:anchor_residue"

)

References glycopeptide_docking().

enable_backbone_moves_pp()

BooleanOptionKey const carbohydrates::glycopeptide_docking::enable_backbone_moves_pp

(

"carbohydrates:glycopeptide_docking:enable_backbone_moves_pp"

)

References glycopeptide_docking().

fix_weights()

BooleanOptionKey const carbohydrates::glycopeptide_docking::fix_weights

(

"carbohydrates:glycopeptide_docking:fix_weights"

)

References glycopeptide_docking().

glycopeptide_docking()

BooleanOptionKey const carbohydrates::glycopeptide_docking::glycopeptide_docking

(

"carbohydrates:glycopeptide_docking"

)

Referenced by allow_glycan_torsion_moves(), anchor_residue(), enable_backbone_moves_pp(), fix_weights(), high_res(), high_res_outer_cycles(), interface_distance(), low_res(), low_res_inner_cycles(), low_res_outer_cycles(), nevery_interface(), ntotal_backbone(), output_debug_pdbs(), output_distance_metrics(), preglycosylate_residues(), preglycosylate_sugar_names(), prevent_anchor_repacking(), randomize_substrate_torsions(), residue_to_glycosylate(), score_only(), substrate_type(), sugardonor_residue(), and tree_type().

high_res()

BooleanOptionKey const carbohydrates::glycopeptide_docking::high_res

(

"carbohydrates:glycopeptide_docking:high_res"

)

References glycopeptide_docking().

high_res_outer_cycles()

IntegerOptionKey const carbohydrates::glycopeptide_docking::high_res_outer_cycles

(

"carbohydrates:glycopeptide_docking:high_res_outer_cycles"

)

References glycopeptide_docking().

interface_distance()

RealOptionKey const carbohydrates::glycopeptide_docking::interface_distance

(

"carbohydrates:glycopeptide_docking:interface_distance"

)

References glycopeptide_docking().

low_res()

BooleanOptionKey const carbohydrates::glycopeptide_docking::low_res

(

"carbohydrates:glycopeptide_docking:low_res"

)

References glycopeptide_docking().

low_res_inner_cycles()

IntegerOptionKey const carbohydrates::glycopeptide_docking::low_res_inner_cycles

(

"carbohydrates:glycopeptide_docking:low_res_inner_cycles"

)

References glycopeptide_docking().

low_res_outer_cycles()

IntegerOptionKey const carbohydrates::glycopeptide_docking::low_res_outer_cycles

(

"carbohydrates:glycopeptide_docking:low_res_outer_cycles"

)

References glycopeptide_docking().

nevery_interface()

StringOptionKey const carbohydrates::glycopeptide_docking::nevery_interface

(

"carbohydrates:glycopeptide_docking:nevery_interface"

)

References glycopeptide_docking().

ntotal_backbone()

StringOptionKey const carbohydrates::glycopeptide_docking::ntotal_backbone

(

"carbohydrates:glycopeptide_docking:ntotal_backbone"

)

References glycopeptide_docking().

output_debug_pdbs()

BooleanOptionKey const carbohydrates::glycopeptide_docking::output_debug_pdbs

(

"carbohydrates:glycopeptide_docking:output_debug_pdbs"

)

References glycopeptide_docking().

output_distance_metrics()

BooleanOptionKey const carbohydrates::glycopeptide_docking::output_distance_metrics

(

"carbohydrates:glycopeptide_docking:output_distance_metrics"

)

References glycopeptide_docking().

preglycosylate_residues()

StringOptionKey const carbohydrates::glycopeptide_docking::preglycosylate_residues

(

"carbohydrates:glycopeptide_docking:preglycosylate_residues"

)

References glycopeptide_docking().

preglycosylate_sugar_names()

StringOptionKey const carbohydrates::glycopeptide_docking::preglycosylate_sugar_names

(

"carbohydrates:glycopeptide_docking:preglycosylate_sugar_names"

)

References glycopeptide_docking().

prevent_anchor_repacking()

BooleanOptionKey const carbohydrates::glycopeptide_docking::prevent_anchor_repacking

(

"carbohydrates:glycopeptide_docking:prevent_anchor_repacking"

)

References glycopeptide_docking().

randomize_substrate_torsions()

BooleanOptionKey const carbohydrates::glycopeptide_docking::randomize_substrate_torsions

(

"carbohydrates:glycopeptide_docking:randomize_substrate_torsions"

)

References glycopeptide_docking().

residue_to_glycosylate()

StringOptionKey const carbohydrates::glycopeptide_docking::residue_to_glycosylate

(

"carbohydrates:glycopeptide_docking:residue_to_glycosylate"

)

References glycopeptide_docking().

score_only()

BooleanOptionKey const carbohydrates::glycopeptide_docking::score_only

(

"carbohydrates:glycopeptide_docking:score_only"

)

References glycopeptide_docking().

substrate_type()

StringOptionKey const carbohydrates::glycopeptide_docking::substrate_type

(

"carbohydrates:glycopeptide_docking:substrate_type"

)

References glycopeptide_docking().

sugardonor_residue()

StringOptionKey const carbohydrates::glycopeptide_docking::sugardonor_residue

(

"carbohydrates:glycopeptide_docking:sugardonor_residue"

)

References glycopeptide_docking().

tree_type()

StringOptionKey const carbohydrates::glycopeptide_docking::tree_type

(

"carbohydrates:glycopeptide_docking:tree_type"

)

References glycopeptide_docking().