Arch Class Reference

Inheritance diagram for Arch:

Public Member Functions
string	name () const
int	nfold1 () const
int	nfold2 () const
Vec	axis1 () const
Vec	axis2 () const
Vec	move1 () const
Vec	move2 () const
Xform	intra_xform1 () const
Xform	intra_xform2 () const
Vec	intra_slide1 () const
Vec	intra_slide2 () const
Vec	intra_move1A () const
Vec	intra_move1B () const
Vec	intra_move2A () const
Vec	intra_move2B () const
int	nangle1 () const
int	nangle2 () const
Real	angle1 () const
Real	angle2 () const
virtual int	max_ori () const
virtual bool	dihedral () const
virtual bool	dihedral1 () const
virtual bool	dihedral2 () const
Xform	xform1 (Real const &a1, Real const &r1) const
Xform	xform2 (Real const &a2, Real const &r2) const
virtual Xform	generator1 (Real, Real, Real, Real) const
virtual Xform	generator2 (Real, Real, Real, Real) const
virtual void	get_disp_dofs (Real const &omega, Real const &slidedis, Real &dcmp1_out, Real &dcmp2_out) const
virtual bool	ori_is_allowed (Real const omega) const
virtual Real	intra_check_dof1 (Real const &d1, Real const &) const
virtual Real	intra_check_dof2 (Real const &, Real const &d2) const
virtual Real	intra_slidedis_to_component_disp (int, int dispcomp, Real d) const
virtual Vec	slide_axis (Real omega) const
void	init (string _name, int _nfold1, Vec _axis1, int _nfold2, Vec _axis2)
Public Member Functions inherited from utility::VirtualBase
	VirtualBase ()=default
	Default constructor. More...
virtual	~VirtualBase ()=default
	The virtual destructor is one of the main reasons for the VirtualBase class. More...
	VirtualBase (VirtualBase const &)=default
	VirtualBase (VirtualBase &&)=default
VirtualBase &	operator= (VirtualBase const &)=default
VirtualBase &	operator= (VirtualBase &&)=default

Public Attributes
string	name_
int	nfold1_
int	nfold2_
Vec	axis1_
Vec	axis2_
Vec	move1_
Vec	move2_
Xform	intra_xform1_
Xform	intra_xform2_
Vec	intra_slide1_
Vec	intra_slide2_
Vec	intra_move1A_
Vec	intra_move1B_
Vec	intra_move2A_
Vec	intra_move2B_
Real	alpha_
Real	sin_alpha_
Real	tan_alpha_
int	nangle1_
int	nangle2_
Real	angle1_
Real	angle2_

Member Function Documentation

angle1()

Real Arch::angle1 ( ) const

inline

angle2()

Real Arch::angle2 ( ) const

inline

axis1()

Vec Arch::axis1 ( ) const

inline

axis2()

Vec Arch::axis2 ( ) const

inline

dihedral()

virtual bool Arch::dihedral ( ) const

inlinevirtual

Reimplemented in ArchP4g_42d, ArchP4m_42d, and ArchP6m_32d.

dihedral1()

virtual bool Arch::dihedral1 ( ) const

inlinevirtual

dihedral2()

virtual bool Arch::dihedral2 ( ) const

inlinevirtual

Reimplemented in ArchP4g_42d, ArchP4m_42d, and ArchP6m_32d.

generator1()

virtual Xform Arch::generator1 ( Real  , Real  , Real  , Real    ) const

inlinevirtual

Reimplemented in ArchP4_42, and ArchP6_32.

References numeric::xyzTransform< core::Real >::rot_deg().

generator2()

virtual Xform Arch::generator2 ( Real  , Real  , Real  , Real    ) const

inlinevirtual

Reimplemented in ArchP4_42, and ArchP6_32.

References numeric::xyzTransform< core::Real >::rot_deg().

get_disp_dofs()

virtual void Arch::get_disp_dofs ( Real const &  omega, Real const &  slidedis, Real &  dcmp1_out, Real &  dcmp2_out  ) const

inlinevirtual

Reimplemented in ArchP4_42, and ArchP6_32.

References loops::gamma, basic::options::OptionKeys::AnchoredDesign::filters::omega, numeric::conversions::radians(), utility_exit_with_message, w, x, predPRE::y, and predPRE::z.

init()

void Arch::init ( string  _name, int  _nfold1, Vec  _axis1, int  _nfold2, Vec  _axis2  )

inline

References angle_degrees(), numeric::conversions::radians(), numeric::rotation_matrix_degrees(), and tan.

intra_check_dof1()

virtual Real Arch::intra_check_dof1 ( Real const &  d1, Real const &    ) const

inlinevirtual

Reimplemented in ArchP4_42, and ArchP6_32.

intra_check_dof2()

virtual Real Arch::intra_check_dof2 ( Real const &  , Real const &  d2  ) const

inlinevirtual

Reimplemented in ArchP4_42, and ArchP6_32.

intra_move1A()

Vec Arch::intra_move1A ( ) const

inline

intra_move1B()

Vec Arch::intra_move1B ( ) const

inline

intra_move2A()

Vec Arch::intra_move2A ( ) const

inline

intra_move2B()

Vec Arch::intra_move2B ( ) const

inline

intra_slide1()

Vec Arch::intra_slide1 ( ) const

inline

intra_slide2()

Vec Arch::intra_slide2 ( ) const

inline

intra_slidedis_to_component_disp()

virtual Real Arch::intra_slidedis_to_component_disp ( int  , int  dispcomp, Real  d  ) const

inlinevirtual

Reimplemented in ArchP4_42, and ArchP6_32.

References numeric::angle_radians(), and utility_exit_with_message.

intra_xform1()

Xform Arch::intra_xform1 ( ) const

inline

intra_xform2()

Xform Arch::intra_xform2 ( ) const

inline

max_ori()

virtual int Arch::max_ori ( ) const

inlinevirtual

Reimplemented in ArchP4_42, and ArchP6_32.

move1()

Vec Arch::move1 ( ) const

inline

move2()

Vec Arch::move2 ( ) const

inline

name()

string Arch::name ( ) const

inline

Referenced by pyrosetta.distributed.docs.ComponentDoc::__repr__(), options_class.Option::getCName(), options_class.Option::getDoxygenRow(), options_class.Option::getMarkdownRow(), options_class.Option::getOptionKeysCC(), options_class.Option::getWikiTableRow(), enumerate_junctions.DHR::print(), enumerate_junctions.DHR::to_component(), and enumerate_junctions.DHR::write_to_file().

nangle1()

int Arch::nangle1 ( ) const

inline

nangle2()

int Arch::nangle2 ( ) const

inline

nfold1()

int Arch::nfold1 ( ) const

inline

nfold2()

int Arch::nfold2 ( ) const

inline

ori_is_allowed()

virtual bool Arch::ori_is_allowed ( Real const  omega ) const

inlinevirtual

References basic::options::OptionKeys::AnchoredDesign::filters::omega.

slide_axis()

virtual Vec Arch::slide_axis ( Real  omega ) const

inlinevirtual

References numeric::xyzVector< T >::cross(), basic::options::OptionKeys::AnchoredDesign::filters::omega, and numeric::rotation_matrix_degrees().

xform1()

Xform Arch::xform1 ( Real const &  a1, Real const &  r1  ) const

inline

References docking::a1, basic::options::OptionKeys::motifs::r1, and numeric::rotation_matrix_degrees().

xform2()

Xform Arch::xform2 ( Real const &  a2, Real const &  r2  ) const

inline

References docking::a2, basic::options::OptionKeys::motifs::r2, and numeric::rotation_matrix_degrees().

Member Data Documentation

alpha_

Real Arch::alpha_

angle1_

Real Arch::angle1_

angle2_

Real Arch::angle2_

axis1_

Vec Arch::axis1_

axis2_

Vec Arch::axis2_

intra_move1A_

Vec Arch::intra_move1A_

intra_move1B_

Vec Arch::intra_move1B_

intra_move2A_

Vec Arch::intra_move2A_

intra_move2B_

Vec Arch::intra_move2B_

intra_slide1_

Vec Arch::intra_slide1_

intra_slide2_

Vec Arch::intra_slide2_

intra_xform1_

Xform Arch::intra_xform1_

intra_xform2_

Xform Arch::intra_xform2_

move1_

Vec Arch::move1_

move2_

Vec Arch::move2_

name_

string Arch::name_

nangle1_

int Arch::nangle1_

nangle2_

int Arch::nangle2_

nfold1_

int Arch::nfold1_

nfold2_

int Arch::nfold2_

sin_alpha_

Real Arch::sin_alpha_

tan_alpha_

Real Arch::tan_alpha_

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The documentation for this class was generated from the following file:

• src/apps/pilot/will/old/tcdock.cc