SewAppend.cc File Reference

Application wrapper for the SEWING protocol. Takes a pre-generated score file and creates backbone assemblies from it. More...

#include <devel/init.hh>
#include <protocols/sewing/sampling/SewGraph.hh>
#include <core/types.hh>
#include <core/id/AtomID.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/io/izstream.hh>
#include <utility/mpi_util.hh>
#include <utility/string_util.hh>
#include <utility/vector1.hh>
#include <utility/sql_database/DatabaseSessionManager.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <basic/database/sql_utils.hh>
#include <map>
#include <set>
#include <iterator>

Namespaces
	SewAppend

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("SewAppend")
basic::options::FileOptionKey const	SewAppend::model_file ("model_file")
basic::options::FileOptionKey const	SewAppend::starting_pdb ("starting_pdb")
basic::options::IntegerOptionKey const	SewAppend::num_assemblies ("num_assemblies")
basic::options::IntegerVectorOptionKey const	SewAppend::segment_starts ("segment_starts")
basic::options::IntegerVectorOptionKey const	SewAppend::segment_ends ("segment_ends")
basic::options::IntegerVectorOptionKey const	SewAppend::match_segments ("match_segments")
basic::options::BooleanOptionKey const	SewAppend::generate_pdb_model_only ("generate_pdb_model_only")

Detailed Description

Application wrapper for the SEWING protocol. Takes a pre-generated score file and creates backbone assemblies from it.

Author

Tim Jacobs

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References utility::options::OptionCollection::add(), argv, utility::options::OptionKeys::options::exit, SewAppend::generate_pdb_model_only, create_a3b_hbs::i, basic::init(), create_a3b_hbs::j, SewAppend::match_segments, SewAppend::model_file, closure_error::models, SewAppend::num_assemblies, basic::options::option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, legacy_score_vs_rmsd::scores, SewAppend::segment_ends, SewAppend::segment_starts, basic::options::OptionKeys::sewing::sewing, SewAppend::starting_pdb, erraser_analysis::temp, utility::to_string(), basic::options::TR, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

Variable Documentation

TR

basic::Tracer TR("SewAppend") ( "SewAppend"  )

static