mutate.cc File Reference

#include <devel/init.hh>
#include <protocols/simple_moves/MutateResidue.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/chemical/AA.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/mutate.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <protocols/relax/membrane/util.hh>
#include <basic/Tracer.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/string_util.hh>
#include <utility/file/file_sys_util.hh>
#include <string>
#include <utility/io/util.hh>
#include <core/pack/task/PackerTask.hh>

Functions
Pose	read_pose ()
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.public.mutate")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, basic::options::OptionKeys::chemical::chemical, test.T009_Exceptions::e, utility::file::file_basename(), utility::file::file_exists(), utility::io::get_lines_from_file_data(), create_a3b_hbs::i, basic::init(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, basic::options::OptionKeys::abinitio::membrane, basic::options::OptionKeys::mp::mutate_relax::mutant_file, basic::options::OptionKeys::mutate::mutate, analyze_ddG_stability::mutation, option, bin_torsions::output, kic_runner::pdb, beta_nonlocal::pose, basic::options::OptionKeys::stepwise::protein::protein, read_pose(), basic::options::OptionKeys::casp::repack, docking::s, test.T120_core::sfxn, numeric::interpolation::to_string(), TR, basic::options::OptionKeys::sc::trim, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

read_pose()

Pose read_pose

(

)

References CREATE_EXCEPTION, basic::Tracer::Debug, option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, docking::s, TR, and basic::options::OptionKeys::inout::dbms::user.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("apps.public.mutate") ( "apps.public.mutate"  )

static

Referenced by main(), and read_pose().