native_ensemble.cc File Reference

#include <core/import_pose/import_pose.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/svn_version.hh>
#include <protocols/canonical_sampling/DbTrajectoryRecorder.hh>
#include <protocols/canonical_sampling/FixedTemperatureController.hh>
#include <protocols/canonical_sampling/MetropolisHastingsMover.hh>
#include <protocols/canonical_sampling/MpiParallelTempering.hh>
#include <protocols/canonical_sampling/ProgressBarObserver.hh>
#include <protocols/canonical_sampling/MultiTempTrialCounter.hh>
#include <protocols/canonical_sampling/TemperatureController.hh>
#include <protocols/kinematic_closure/BalancedKicMover.hh>
#include <protocols/kinematic_closure/perturbers/RamaPerturber.hh>
#include <protocols/kinematic_closure/perturbers/WalkingPerturber.hh>
#include <protocols/kinematic_closure/perturbers/WalkingBondAnglePerturber.hh>
#include <protocols/kinematic_closure/pivot_pickers/FixedOffsetPivots.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/TrialCounter.hh>
#include <protocols/simple_moves/sidechain_moves/SidechainMover.hh>
#include <basic/database/schema_generator/Column.hh>
#include <basic/database/schema_generator/Schema.hh>
#include <basic/database/sql_utils.hh>
#include <devel/init.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/inout.OptionKeys.gen.hh>
#include <basic/options/keys/jd2.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <numeric/random/random.hh>
#include <utility/sql_database/DatabaseSessionManager.hh>
#include <utility/tools/make_vector1.hh>
#include <utility/vector1.hh>
#include <cppdb/frontend.h>
#include <ctime>
#include <string>

Classes
class	NativeEnsemble

Typedefs
typedef utility::vector1< Size >	IndexList
typedef utility::pointer::owning_ptr< NativeEnsemble >	NativeEnsembleOP
typedef utility::pointer::owning_ptr< NativeEnsemble const >	NativeEnsembleCOP

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	tr ("apps.native_ensemble")

Typedef Documentation

IndexList

typedef utility::vector1<Size> IndexList

NativeEnsembleCOP

typedef utility::pointer::owning_ptr<NativeEnsemble const> NativeEnsembleCOP

NativeEnsembleOP

typedef utility::pointer::owning_ptr<NativeEnsemble> NativeEnsembleOP

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References job_manager::app, argv, basic::options::OptionKeys::inout::dbms::database_name, amino_acids::frequency, basic::init(), autocorrelation::iterations, internal_coordinates::loop, utility::tools::make_vector1(), pyrosetta.utility.array::message, name, NEW_OPT, basic::options::OptionKeys::jd2::no_output, option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, basic::options::quiet, NativeEnsemble::register_options(), docking::s, local::temperature, basic::options::OptionKeys::inout::dbms::user, utility_exit_with_message, and weights().

Variable Documentation

tr

basic::Tracer tr("apps.native_ensemble") ( "apps.native_ensemble"  )

static

Referenced by NativeEnsemble::show_header().