app for matching motifs to a protein DNA interface More...

#include <devel/init.hh>
#include <protocols/dna/DnaDesignDef.hh>
#include <protocols/dna/DnaInterfaceFinder.hh>
#include <protocols/dna/util.hh>
#include <protocols/motifs/motif_utils.hh>
#include <protocols/motifs/MotifSearch.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/dna/setup.hh>
#include <core/scoring/dna/BasePartner.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <string>
#include <iostream>
#include <basic/options/option.hh>
#include <basic/options/util.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/dna.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <utility/vector0.hh>

Functions
void	dna_motif_matcher ()

int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.dna_motif_matcher")

Detailed Description

app for matching motifs to a protein DNA interface

Author: xingjiepan

Function Documentation

◆ dna_motif_matcher()

void dna_motif_matcher ( )

References basic::options::OptionKeys::dna::design::dna_defs, end, create_a3b_hbs::i, interface, create_a3b_hbs::nres, basic::options::option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::out::prefix, oop_conformations::scorefxn, basic::options::start_files(), utility::string_split(), TR, and basic::options::OptionKeys::inout::dbms::user.

Referenced by main().

◆ main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, dna_motif_matcher(), test.T009_Exceptions::e, and basic::init().

Variable Documentation

◆ TR

basic::Tracer TR("apps.pilot.dna_motif_matcher") ( "apps.pilot.dna_motif_matcher" )

static

Referenced by dna_motif_matcher().