block_stack_test.cc File Reference

#include <core/types.hh>
#include <core/chemical/util.hh>
#include <core/chemical/rna/RNA_Info.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/id/NamedAtomID.hh>
#include <devel/init.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/rna/RNA_BasePairClassifier.hh>
#include <core/pose/full_model_info/util.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <protocols/rna/denovo/util.hh>
#include <protocols/viewer/viewers.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <utility/file/FileName.hh>
#include <utility/stream_util.hh>
#include <numeric/xyz.functions.hh>
#include <ObjexxFCL/string.functions.hh>
#include <ObjexxFCL/format.hh>
#include <fstream>
#include <iostream>
#include <sstream>
#include <string>
#include <list>

Functions
Vector	get_repl_xyz (pose::Pose const &pose, Size const &i, utility::vector1< std::string > const &atom_names)
void	block_stack_test ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.rhiju.block_stack_test")

Function Documentation

block_stack_test()

void block_stack_test

(

)

References basic::options::OptionKeys::chemical::chemical, pyrosetta::create_score_function, get_repl_xyz(), utility::tools::make_vector1(), beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::full_model::rna::rna, oop_conformations::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, and TR.

Referenced by my_main().

get_repl_xyz()

Vector get_repl_xyz	(	pose::Pose const &	pose,
		Size const &	i,
		utility::vector1< std::string > const &	atom_names
	)

References ObjexxFCL::abs(), basic::options::OptionKeys::james::atom_names, basic::options::OptionKeys::in::file::centroid, create_a3b_hbs::i, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, N, beta_nonlocal::pose, runtime_assert, stub(), and numeric::xyzVector< T >::z().

Referenced by block_stack_test().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), my_main(), and viewer_main().

my_main()

void* my_main

(

void *

)

References block_stack_test(), and utility::options::OptionKeys::options::exit.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("apps.pilot.rhiju.block_stack_test") ( "apps.pilot.rhiju.block_stack_test"  )

static

Referenced by block_stack_test().