Namespaces
	dump

	filter

	harvest

	match

	path

	score

Functions
BooleanOptionKey const	mh ("mh")

StringOptionKey const	motif_out_file ("mh:motif_out_file")

FileVectorOptionKey const	harvest_motifs ("mh:harvest_motifs")

FileVectorOptionKey const	print_motifs ("mh:print_motifs")

FileVectorOptionKey const	remove_duplicates ("mh:remove_duplicates")

FileVectorOptionKey const	dump_motif_pdbs ("mh:dump_motif_pdbs")

FileVectorOptionKey const	merge_motifs ("mh:merge_motifs")

FileVectorOptionKey const	merge_scores ("mh:merge_scores")

BooleanOptionKey const	merge_motifs_one_per_bin ("mh:merge_motifs_one_per_bin")

BooleanOptionKey const	gen_reverse_motifs_on_load ("mh:gen_reverse_motifs_on_load")

FileVectorOptionKey const	dump_input_pdb ("mh:dump_input_pdb")

FileVectorOptionKey const	score_pdbs ("mh:score_pdbs")

FileVectorOptionKey const	sequence_recovery ("mh:sequence_recovery")

FileVectorOptionKey const	explicit_motif_score ("mh:explicit_motif_score")

FileVectorOptionKey const	harvest_scores ("mh:harvest_scores")

FileOptionKey const	print_scores ("mh:print_scores")

FileVectorOptionKey const	dump_matching_motifs ("mh:dump_matching_motifs")

BooleanOptionKey const	score_across_chains_only ("mh:score_across_chains_only")

BooleanOptionKey const	normalize_score_ncontact ("mh:normalize_score_ncontact")

IntegerOptionKey const	harvest_motifs_min_hh_ends ("mh:harvest_motifs_min_hh_ends")

BooleanOptionKey const	ignore_io_errors ("mh:ignore_io_errors")

RealOptionKey const	motif_match_radius ("mh:motif_match_radius")

RealVectorOptionKey const	merge_similar_motifs ("mh:merge_similar_motifs")

Function Documentation

◆ dump_input_pdb()

FileVectorOptionKey const mh::dump_input_pdb ( "mh:dump_input_pdb" )

◆ dump_matching_motifs()

FileVectorOptionKey const mh::dump_matching_motifs ( "mh:dump_matching_motifs" )

◆ dump_motif_pdbs()

FileVectorOptionKey const mh::dump_motif_pdbs ( "mh:dump_motif_pdbs" )

◆ explicit_motif_score()

FileVectorOptionKey const mh::explicit_motif_score ( "mh:explicit_motif_score" )

◆ gen_reverse_motifs_on_load()

BooleanOptionKey const mh::gen_reverse_motifs_on_load ( "mh:gen_reverse_motifs_on_load" )

◆ harvest_motifs()

FileVectorOptionKey const mh::harvest_motifs ( "mh:harvest_motifs" )

◆ harvest_motifs_min_hh_ends()

IntegerOptionKey const mh::harvest_motifs_min_hh_ends ( "mh:harvest_motifs_min_hh_ends" )

◆ harvest_scores()

FileVectorOptionKey const mh::harvest_scores ( "mh:harvest_scores" )

◆ ignore_io_errors()

BooleanOptionKey const mh::ignore_io_errors ( "mh:ignore_io_errors" )

◆ merge_motifs()

FileVectorOptionKey const mh::merge_motifs ( "mh:merge_motifs" )

◆ merge_motifs_one_per_bin()

BooleanOptionKey const mh::merge_motifs_one_per_bin ( "mh:merge_motifs_one_per_bin" )

◆ merge_scores()

FileVectorOptionKey const mh::merge_scores ( "mh:merge_scores" )

◆ merge_similar_motifs()

RealVectorOptionKey const mh::merge_similar_motifs ( "mh:merge_similar_motifs" )

◆ mh()

BooleanOptionKey const mh::mh ( "mh" )

◆ motif_match_radius()

RealOptionKey const mh::motif_match_radius ( "mh:motif_match_radius" )

◆ motif_out_file()

StringOptionKey const mh::motif_out_file ( "mh:motif_out_file" )

◆ normalize_score_ncontact()

BooleanOptionKey const mh::normalize_score_ncontact ( "mh:normalize_score_ncontact" )

◆ print_motifs()

FileVectorOptionKey const mh::print_motifs ( "mh:print_motifs" )

◆ print_scores()

FileOptionKey const mh::print_scores ( "mh:print_scores" )

◆ remove_duplicates()

FileVectorOptionKey const mh::remove_duplicates ( "mh:remove_duplicates" )

◆ score_across_chains_only()

BooleanOptionKey const mh::score_across_chains_only ( "mh:score_across_chains_only" )

◆ score_pdbs()

FileVectorOptionKey const mh::score_pdbs ( "mh:score_pdbs" )

◆ sequence_recovery()

FileVectorOptionKey const mh::sequence_recovery ( "mh:sequence_recovery" )

Namespaces

Functions