abego_predict.cc File Reference

#include <devel/init.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/util.hh>
#include <core/types.hh>
#include <protocols/ss_prediction/SS_predictor.hh>
#include <iostream>
#include <utility/io/ozstream.hh>
#include <ObjexxFCL/format.hh>

Functions
char	get_label (vector1< Real > ss_pred_pos)
void	predict_ss (vector1< vector1< Real > > ss_pred, string fasta, string id)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	tr ("abego_predict")

Function Documentation

get_label()

char get_label

(

vector1< Real >

ss_pred_pos

)

References predPRE::label.

Referenced by predict_ss().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::options::OptionKeys::in::file::fasta, in::file::fasta(), create_a3b_hbs::ii, basic::init(), option, predict_ss(), basic::options::OptionKeys::relax::sequence, ObjexxFCL::size(), and basic::options::OptionKeys::frags::ss_pred.

predict_ss()

void predict_ss	(	vector1< vector1< Real > >	ss_pred,
		string	fasta,
		string	id
	)

References ObjexxFCL::format::F(), basic::options::OptionKeys::in::file::fasta, get_label(), ObjexxFCL::format::I(), create_a3b_hbs::ii, beta_nonlocal::jj, predPRE::label, bin_torsions::output, and basic::options::OptionKeys::frags::ss_pred.

Referenced by main().

Variable Documentation

tr

basic::Tracer tr("abego_predict") ( "abego_predict"  )

static

Referenced by ui::task::TaskView::action_output_save_as(), create_theozyme_pdb(), if(), basic::TracerImpl::init(), main(), ui::widgets::PoseEditor::on_action_open_pose_triggered(), ui::task::ProjectView::on_action_open_project_triggered(), ui::task::TaskSubmit::on_add_files_clicked(), ui::task::TaskSubmit::on_add_input_structure_clicked(), ui::task::TaskSubmit::on_add_native_structure_clicked(), ui::network::PathArgument::on_button_clicked(), ui::task::TaskView::on_export_all_files_clicked(), ui::task::JobSubmit::on_flags_from_file_clicked(), ui::config::ConfigDialog::on_pdb_viewer_browse_clicked(), ui::task::JobSubmit::on_rename_job_clicked(), operator<<(), print_res_ids(), numeric::linear_algebra::qzval(), numeric::linear_algebra::qzvec(), ui::widgets::PoseEditor::save_pose(), ui::task::save_project(), sequence_tolerance_mf_main(), basic::TracerImpl::set_ios_hook(), basic::Tracer::set_ios_hook(), show(), basic::show_time(), and test_chi_xform().