make_frag_ssdep.cc File Reference

#include <core/types.hh>
#include <protocols/jd2/parser/BluePrint.hh>
#include <protocols/forge/build/Interval.hh>
#include <core/pose/Pose.hh>
#include <protocols/moves/DsspMover.hh>
#include <core/import_pose/import_pose.hh>
#include <core/fragment/Frame.hh>
#include <core/fragment/IndependentBBTorsionSRFD.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/fragment/picking_old/vall/util.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <devel/init.hh>
#include <utility/excn/Exceptions.hh>

Classes
class	ThisApplication

Typedefs
typedef core::Size	Size
typedef std::string	String

Functions
FrameList	pick_fragments (String const &complete_ss, String const &complete_aa, utility::vector1< String > const &complete_abego, Interval const &interval, Size const frag_length, Size const n_frags)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("pick_fragments")

Detailed Description

Author

Nobuyasu Koga

Typedef Documentation

Size

typedef core::Size Size

String

typedef std::string String

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, blue, basic::options::OptionKeys::flxbb::blueprint, test.T009_Exceptions::e, basic::Tracer::Fatal, usec::frag_size, test.Workshop4test::fragset, basic::init(), basic::options::OptionKeys::frags::n_frags, basic::options::OptionKeys::ddg::nfrags, option, bin_torsions::output, pick_fragments(), beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, ThisApplication::register_options(), in::file::s(), subloop_histogram::size, challenge::ss, TR, basic::options::OptionKeys::inout::dbms::user, utility_exit_with_message, and value.

pick_fragments()

FrameList pick_fragments	(	String const &	complete_ss,
		String const &	complete_aa,
		utility::vector1< String > const &	complete_abego,
		Interval const &	interval,
		Size const	frag_length,
		Size const	n_frags
	)

References demo.D080_Loop_modeling::frag_length, numeric::kinematic_closure::frame(), score_vs_rmsd::frames, create_a3b_hbs::ii, basic::options::OptionKeys::ms::checkpoint::interval, create_a3b_hbs::j, basic::options::OptionKeys::frags::n_frags, make_symmdef_file_denovo::pos, runtime_assert, and TR.

Referenced by SwapElementsMover1::apply(), SwapElementsMover2::apply(), main(), SwapElementsMover1::pick_fragments(), SwapElementsMover2::pick_fragments(), and VarLengthBuildKristin::public_pick_fragments().

Variable Documentation

TR

basic::Tracer TR("pick_fragments") ( "pick_fragments"  )

static

Referenced by main(), and pick_fragments().