angle_recovery_stats.cc File Reference

#include <basic/options/option.hh>
#include <devel/init.hh>
#include <core/types.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <core/chemical/util.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/pack/dunbrack/RotamerLibrary.hh>
#include <core/pack/dunbrack/DunbrackRotamer.fwd.hh>
#include <core/import_pose/pose_stream/MetaPoseInputStream.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <core/sequence/util.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/id/SequenceMapping.hh>
#include <protocols/jumping/util.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>
#include <core/scoring/sasa.hh>
#include <string>
#include <utility/excn/Exceptions.hh>

Functions
char	torsion2big_bin (float const phi, float const psi, float const omega)
utility::vector1< char >	get_ss (core::pose::Pose &pose)
void	print_rot_vec (core::pack::dunbrack::RotVector rot_vec, std::ostream &out)
utility::vector1< char >	bb_bins_from_pose (core::pose::Pose const &pose)
utility::vector1< core::pack::dunbrack::RotVector >	rots_from_pose (core::pose::Pose const &pose)
utility::vector1< utility::vector1< core::Real > >	chis_from_pose (core::pose::Pose const &pose)
void	print_rot_vector (std::ostream &output, utility::vector1< core::pack::dunbrack::RotVector > rots)
int	main (int argc, char *argv[])

Detailed Description

Author

James Thompson

Function Documentation

bb_bins_from_pose()

utility::vector1< char > bb_bins_from_pose

(

core::pose::Pose const &

pose

)

References create_a3b_hbs::ii, beta_nonlocal::pose, and torsion2big_bin().

Referenced by main().

chis_from_pose()

utility::vector1< utility::vector1< core::Real > > chis_from_pose

(

core::pose::Pose const &

pose

)

References create_a3b_hbs::ii, beta_nonlocal::jj, and beta_nonlocal::pose.

Referenced by main().

get_ss()

utility::vector1< char > get_ss

(

core::pose::Pose &

pose

)

References create_a3b_hbs::ii, beta_nonlocal::pose, and challenge::ss.

main()

int main	(	int	argc,
		char *	argv[]
	)

References spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib::A, aln, argv, bb_bins_from_pose(), utility::io::oc::cerr, basic::options::OptionKeys::chemical::chemical, chis_from_pose(), basic::options::OptionKeys::constraints::constraints, utility::io::oc::cout, test.T009_Exceptions::e, ObjexxFCL::format::F(), create_a3b_hbs::ii, basic::init(), gaussian-sampling::input, beta_nonlocal::jj, surface_app::native, basic::options::OptionKeys::in::file::native, basic::options::option, bin_torsions::output, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, rots_from_pose(), runtime_assert, basic::options::OptionKeys::relax::sequence, subloop_histogram::size, ObjexxFCL::string_of(), and basic::options::OptionKeys::mp::visualize::width.

print_rot_vec()

void print_rot_vec	(	core::pack::dunbrack::RotVector	rot_vec,
		std::ostream &	out
	)

References create_a3b_hbs::ii.

print_rot_vector()

void print_rot_vector	(	std::ostream &	output,
		utility::vector1< core::pack::dunbrack::RotVector >	rots
	)

References create_a3b_hbs::ii, beta_nonlocal::jj, and bin_torsions::output.

rots_from_pose()

utility::vector1< core::pack::dunbrack::RotVector > rots_from_pose

(

core::pose::Pose const &

pose

)

References create_a3b_hbs::ii, beta_nonlocal::pose, and rot.

Referenced by main().

torsion2big_bin()

char torsion2big_bin	(	float const	phi,
		float const	psi,
		float const	omega
	)

References ObjexxFCL::abs(), basic::options::OptionKeys::AnchoredDesign::filters::omega, oop_conformations::phi, and oop_conformations::psi.

Referenced by bb_bins_from_pose().