convert.cc File Reference

Converts PDBs between residue type sets. Use -in:file:residue_type_set to specify type sets. More...

#include <core/chemical/ChemicalManager.hh>
#include <devel/init.hh>
#include <utility/vector1.hh>
#include <basic/options/util.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <core/pose/Pose.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <basic/Tracer.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/util.hh>
#include <core/util/SwitchResidueTypeSet.hh>

Functions
int	usage (char *msg)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("pilot_apps.blivens.convert")

Detailed Description

Converts PDBs between residue type sets. Use -in:file:residue_type_set to specify type sets.

Author

Spencer Bliven blive.nosp@m.ns@u.nosp@m..wash.nosp@m.ingt.nosp@m.on.ed.nosp@m.u

Date

Created October 2008

Command Line

convert2centroid -s fa.pdb -o centroid.pdb -database db 

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, in::file::centroid_input(), test.T009_Exceptions::e, in::file::fullatom(), out::file::fullatom(), basic::Tracer::Info, basic::init(), out::file::o(), option, kic_runner::pdb, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, in::file::residue_type_set(), out::file::residue_type_set(), in::file::s(), basic::options::start_file(), TR, usage(), basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

usage()

int usage

(

char *

msg

)

References utility::options::OptionKeys::options::exit, and TR.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("pilot_apps.blivens.convert") ( "pilot_apps.blivens.convert"  )

static

Referenced by main(), and usage().