interface_ddg_bind.cc File Reference

Interface ddG bind of mutation prediction protocol. More...

#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/pose/ResidueIndexDescription.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/import_pose/import_pose.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/JobInputter.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/jd2/InnerJob.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/datacache/CacheableData.hh>
#include <basic/Tracer.hh>
#include <devel/init.hh>
#include <utility/io/izstream.hh>
#include <utility/vector1.hh>
#include <utility/file/FileName.hh>
#include <map>
#include <string>
#include <core/pack/task/ResidueLevelTask.hh>

Classes
class	CloseContactWithResidue
struct	input_mutation
class	InterfaceDDGMutationTask
class	InterfaceDDGBindInnerJob
class	InterfaceDDGBindJobInputter
class	InterfaceDDGMover

Typedefs
using	CloseContactWithResidueOP = utility::pointer::shared_ptr< CloseContactWithResidue >
using	CloseContactWithResidueCOP = utility::pointer::shared_ptr< const CloseContactWithResidue >
using	InterfaceDDGMutationTaskOP = utility::pointer::shared_ptr< InterfaceDDGMutationTask >
using	InterfaceDDGMutationTaskCOP = utility::pointer::shared_ptr< const InterfaceDDGMutationTask >
using	InterfaceDDGBindInnerJobOP = utility::pointer::shared_ptr< InterfaceDDGBindInnerJob >
using	InterfaceDDGBindInnerJobCOP = utility::pointer::shared_ptr< const InterfaceDDGBindInnerJob >
using	InterfaceDDGBindJobInputterOP = utility::pointer::shared_ptr< InterfaceDDGBindJobInputter >
using	InterfaceDDGBindJobInputterCOP = utility::pointer::shared_ptr< const InterfaceDDGBindJobInputter >
using	InterfaceDDGMoverOP = utility::pointer::shared_ptr< InterfaceDDGMover >
using	InterfaceDDGMoverCOP = utility::pointer::shared_ptr< const InterfaceDDGMover >

Functions
int	main (int argc, char *argv[])

Detailed Description

Interface ddG bind of mutation prediction protocol.

Author

Andrew Leaver-Fay (aleav.nosp@m.erfa.nosp@m.y@gma.nosp@m.il.c.nosp@m.om)

Typedef Documentation

CloseContactWithResidueCOP

using CloseContactWithResidueCOP = utility::pointer::shared_ptr<const CloseContactWithResidue>

CloseContactWithResidueOP

using CloseContactWithResidueOP = utility::pointer::shared_ptr<CloseContactWithResidue>

InterfaceDDGBindInnerJobCOP

using InterfaceDDGBindInnerJobCOP = utility::pointer::shared_ptr<const InterfaceDDGBindInnerJob>

InterfaceDDGBindInnerJobOP

using InterfaceDDGBindInnerJobOP = utility::pointer::shared_ptr<InterfaceDDGBindInnerJob>

InterfaceDDGBindJobInputterCOP

using InterfaceDDGBindJobInputterCOP = utility::pointer::shared_ptr<const InterfaceDDGBindJobInputter>

InterfaceDDGBindJobInputterOP

using InterfaceDDGBindJobInputterOP = utility::pointer::shared_ptr<InterfaceDDGBindJobInputter>

InterfaceDDGMoverCOP

using InterfaceDDGMoverCOP = utility::pointer::shared_ptr<const InterfaceDDGMover>

InterfaceDDGMoverOP

using InterfaceDDGMoverOP = utility::pointer::shared_ptr<InterfaceDDGMover>

InterfaceDDGMutationTaskCOP

using InterfaceDDGMutationTaskCOP = utility::pointer::shared_ptr<const InterfaceDDGMutationTask>

InterfaceDDGMutationTaskOP

using InterfaceDDGMutationTaskOP = utility::pointer::shared_ptr<InterfaceDDGMutationTask>

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), demo.D060_Folding::jobs, and NEW_OPT.