The design_glycans protocol. More...

Inheritance diagram for DesignGlycansProtocol:

Public Member Functions
	DesignGlycansProtocol ()
	Default constructor. More...

	DesignGlycansProtocol (DesignGlycansProtocol const &)=default
	Copy constructor. More...

DesignGlycansProtocol &	operator= (DesignGlycansProtocol object_to_copy)

virtual	~DesignGlycansProtocol ()=default

virtual void	show (std::ostream &output=std::cout) const
	Generate string representation of DesignGlycansProtocol for debugging purposes. More...

virtual std::string	get_name () const
	Return the name of the Mover. More...

virtual moves::MoverOP	clone () const

virtual moves::MoverOP	fresh_instance () const

virtual void	apply (core::pose::Pose &pose)
	Apply the corresponding protocol to <pose>. More...

	DesignGlycansProtocol ()
	Default constructor. More...

	DesignGlycansProtocol (DesignGlycansProtocol const &)=default
	Copy constructor. More...

DesignGlycansProtocol &	operator= (DesignGlycansProtocol object_to_copy)

virtual	~DesignGlycansProtocol ()=default

virtual void	show (std::ostream &output=std::cout) const
	Generate string representation of DesignGlycansProtocol for debugging purposes. More...

virtual std::string	get_name () const
	Return the name of the Mover. More...

virtual moves::MoverOP	clone () const

virtual moves::MoverOP	fresh_instance () const

virtual void	apply (core::pose::Pose &pose)
	Apply the corresponding protocol to <pose>. More...

Static Public Member Functions
static void	register_options ()
	Register options with the option system. More...

static void	register_options ()
	Register options with the option system. More...

Private Member Functions
void	set_commandline_options ()

void	init ()

void	print_sequences (core::pose::Pose const &pose)

void	set_commandline_options ()

void	init ()

void	print_sequences (core::pose::Pose const &pose)

Private Attributes
core::scoring::ScoreFunctionOP	sf_

protocols::minimization_packing::PackRotamersMoverOP	designer_

Friends
void	swap (DesignGlycansProtocol &first, DesignGlycansProtocol &second)

void	swap (DesignGlycansProtocol &first, DesignGlycansProtocol &second)

Detailed Description

The design_glycans protocol.

Constructor & Destructor Documentation

◆ DesignGlycansProtocol() [1/4]

DesignGlycansProtocol::DesignGlycansProtocol ( )

inline

Default constructor.

References basic::init().

◆ DesignGlycansProtocol() [2/4]

DesignGlycansProtocol::DesignGlycansProtocol ( DesignGlycansProtocol const & )

default

Copy constructor.

◆ ~DesignGlycansProtocol() [1/2]

virtual DesignGlycansProtocol::~DesignGlycansProtocol ( )

virtualdefault

◆ DesignGlycansProtocol() [3/4]

DesignGlycansProtocol::DesignGlycansProtocol ( )

inline

Default constructor.

References basic::init().

◆ DesignGlycansProtocol() [4/4]

DesignGlycansProtocol::DesignGlycansProtocol ( DesignGlycansProtocol const & )

default

Copy constructor.

◆ ~DesignGlycansProtocol() [2/2]

virtual DesignGlycansProtocol::~DesignGlycansProtocol ( )

virtualdefault

Member Function Documentation

◆ apply() [1/2]

virtual void DesignGlycansProtocol::apply ( core::pose::Pose & pose )

inlinevirtual

Apply the corresponding protocol to <pose>.

References utility::io::oc::cout, beta_nonlocal::pose, and show().

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

◆ apply() [2/2]

virtual void DesignGlycansProtocol::apply ( core::pose::Pose & pose )

inlinevirtual

Apply the corresponding protocol to <pose>.

References utility::io::oc::cout, beta_nonlocal::pose, and show().

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

◆ clone() [1/2]

virtual moves::MoverOP DesignGlycansProtocol::clone ( ) const

inlinevirtual

◆ clone() [2/2]

virtual moves::MoverOP DesignGlycansProtocol::clone ( ) const

inlinevirtual

◆ fresh_instance() [1/2]

virtual moves::MoverOP DesignGlycansProtocol::fresh_instance ( ) const

inlinevirtual

◆ fresh_instance() [2/2]

virtual moves::MoverOP DesignGlycansProtocol::fresh_instance ( ) const

inlinevirtual

◆ get_name() [1/2]

virtual std::string DesignGlycansProtocol::get_name ( ) const

inlinevirtual

Return the name of the Mover.

◆ get_name() [2/2]

virtual std::string DesignGlycansProtocol::get_name ( ) const

inlinevirtual

Return the name of the Mover.

◆ init() [1/2]

void DesignGlycansProtocol::init ( )

inlineprivate

References test.T300_PyJobDistributor::pp, vancomycin::task, and test.G200_Module_Region::tf.

◆ init() [2/2]

void DesignGlycansProtocol::init ( )

inlineprivate

References test.T300_PyJobDistributor::pp, vancomycin::task, and test.G200_Module_Region::tf.

◆ operator=() [1/2]

DesignGlycansProtocol& DesignGlycansProtocol::operator= ( DesignGlycansProtocol object_to_copy )

inline

References swap().

◆ operator=() [2/2]

DesignGlycansProtocol& DesignGlycansProtocol::operator= ( DesignGlycansProtocol object_to_copy )

inline

References swap().

◆ print_sequences() [1/2]

void DesignGlycansProtocol::print_sequences ( core::pose::Pose const & pose )

inlineprivate

References utility::io::oc::cout, create_a3b_hbs::i, and beta_nonlocal::pose.

◆ print_sequences() [2/2]

void DesignGlycansProtocol::print_sequences ( core::pose::Pose const & pose )

inlineprivate

References utility::io::oc::cout, create_a3b_hbs::i, and beta_nonlocal::pose.

◆ register_options() [1/2]

static void DesignGlycansProtocol::register_options ( )

inlinestatic

Register options with the option system.

◆ register_options() [2/2]

static void DesignGlycansProtocol::register_options ( )

inlinestatic

Register options with the option system.

◆ set_commandline_options() [1/2]

void DesignGlycansProtocol::set_commandline_options ( )

inlineprivate

◆ set_commandline_options() [2/2]

void DesignGlycansProtocol::set_commandline_options ( )

inlineprivate

◆ show() [1/2]

virtual void DesignGlycansProtocol::show ( std::ostream & output = std::cout ) const

inlinevirtual

Generate string representation of DesignGlycansProtocol for debugging purposes.

References info(), bin_torsions::output, and show().

Referenced by pyrosetta.distributed.viewer.core.Viewer::__call__().

◆ show() [2/2]

virtual void DesignGlycansProtocol::show ( std::ostream & output = std::cout ) const

inlinevirtual

Generate string representation of DesignGlycansProtocol for debugging purposes.

References info(), bin_torsions::output, and show().

Referenced by pyrosetta.distributed.viewer.core.Viewer::__call__().

Friends And Related Function Documentation

◆ swap [1/2]

void swap	(	DesignGlycansProtocol &	first,
		DesignGlycansProtocol &	second
	)

friend

◆ swap [2/2]

void swap	(	DesignGlycansProtocol &	first,
		DesignGlycansProtocol &	second
	)

friend

Member Data Documentation

◆ designer_

protocols::minimization_packing::PackRotamersMoverOP DesignGlycansProtocol::designer_

private

◆ sf_

core::scoring::ScoreFunctionOP DesignGlycansProtocol::sf_

private

The documentation for this class was generated from the following file:

src/apps/pilot/labonte/design_glycans.cc

Public Member Functions

Static Public Member Functions

Private Member Functions

Private Attributes

Friends

Detailed Description

Constructor & Destructor Documentation

◆ DesignGlycansProtocol() [1/4]

◆ DesignGlycansProtocol() [2/4]

◆ ~DesignGlycansProtocol() [1/2]

◆ DesignGlycansProtocol() [3/4]

◆ DesignGlycansProtocol() [4/4]

◆ ~DesignGlycansProtocol() [2/2]

Member Function Documentation

◆ apply() [1/2]

◆ apply() [2/2]

◆ clone() [1/2]

◆ clone() [2/2]

◆ fresh_instance() [1/2]

◆ fresh_instance() [2/2]

◆ get_name() [1/2]

◆ get_name() [2/2]

◆ init() [1/2]

◆ init() [2/2]

◆ operator=() [1/2]

◆ operator=() [2/2]

◆ print_sequences() [1/2]

◆ print_sequences() [2/2]

◆ register_options() [1/2]

◆ register_options() [2/2]

◆ set_commandline_options() [1/2]

◆ set_commandline_options() [2/2]

◆ show() [1/2]

◆ show() [2/2]

Friends And Related Function Documentation

◆ swap [1/2]

◆ swap [2/2]

Member Data Documentation

◆ designer_

◆ sf_