super_aln.cc File Reference

#include <core/types.hh>
#include <devel/init.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/rms_util.hh>
#include <core/import_pose/pose_stream/PoseInputStream.hh>
#include <core/import_pose/pose_stream/PoseInputStream.fwd.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>
#include <core/sequence/util.hh>
#include <core/id/SequenceMapping.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <core/pose/init_id_map.hh>

Functions
int	main (int argc, char *argv[])

Detailed Description

Author

James Thompson

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References in::file::alignment(), aln, cm::aln_format(), argv, basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, test.T009_Exceptions::e, end, create_a3b_hbs::ii, basic::init(), out::file::o(), option, localrmsd::output_name, test.T008_Serialization::pose1, test.T008_Serialization::pose2, execute::residues, in::file::s(), superimpose_pose(), in::target_residues(), and basic::options::OptionKeys::inout::dbms::user.