fragment_extract.cc File Reference

#include <core/scoring/Energies.hh>
#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/util.hh>
#include <protocols/viewer/viewers.hh>
#include <core/io/silent/ProteinSilentStruct.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/options/option.hh>
#include <core/options/after_opts.hh>
#include <core/options/util.hh>
#include <core/options/option_macros.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/io/pose_stream/ExtendedPoseInputStream.hh>
#include <core/io/pose_stream/PoseInputStream.fwd.hh>
#include <core/io/pose_stream/PDBPoseInputStream.hh>
#include <core/io/pose_stream/SilentFilePoseInputStream.hh>
#include <core/util/basic.hh>
#include <devel/init.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <utility/excn/Exceptions.hh>
#include <numeric/xyzVector.hh>
#include <numeric/conversions.hh>
#include <numeric/random/random.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/angle.functions.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <core/util/Tracer.hh>
#include <core/options/keys/out.OptionKeys.gen.hh>
#include <core/options/keys/in.OptionKeys.gen.hh>
#include <core/options/keys/score.OptionKeys.gen.hh>

Functions
void	frag_extract_test ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Function Documentation

frag_extract_test()

void frag_extract_test

(

)

References basic::options::OptionKeys::chemical::chemical, ObjexxFCL::format::F(), create_a3b_hbs::i, gaussian-sampling::input, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, out::file::o(), option, erraser_single_res_analysis::out, lactamize::outfile, beta_nonlocal::pose, out::file::residue_type_set(), basic::options::OptionKeys::in::file::silent, in::file::silent(), and utility_exit_with_message.

Referenced by my_main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), my_main(), NEW_OPT, and viewer_main().

my_main()

void* my_main

(

void *

)

References utility::options::OptionKeys::options::exit, and frag_extract_test().

Referenced by main().