Rosetta: DisulfEpos Class Reference

Rosetta

Inheritance diagram for DisulfEpos:

Inheritance graph

[legend]

Public Member Functions
	DisulfEpos ()

core::Real	rms (ObjexxFCL::FArray2D< core::Real > &farrayin)

core::Real	rms (core::conformation::Residue const &res1, core::conformation::Residue const &res2)

core::Real	rms (core::pose::Pose const &pose, core::Size res1, core::Size res2)

ObjexxFCL::FArray2D< core::Real >	make_farray (numeric::xyzVector< core::Real > ca1, numeric::xyzVector< core::Real > n1, numeric::xyzVector< core::Real > c1, numeric::xyzVector< core::Real > ca2, numeric::xyzVector< core::Real > n2, numeric::xyzVector< core::Real > c2)

Public Member Functions inherited from utility::VirtualBase
	VirtualBase ()=default
	Default constructor. More...

virtual	~VirtualBase ()=default
	The virtual destructor is one of the main reasons for the VirtualBase class. More...

	VirtualBase (VirtualBase const &)=default

	VirtualBase (VirtualBase &&)=default

VirtualBase &	operator= (VirtualBase const &)=default

VirtualBase &	operator= (VirtualBase &&)=default

Public Attributes
std::string	pdb

core::Size	pdbres1

core::Size	pdbres2

core::Size	sep

char	ss1

char	ss2

numeric::xyzVector< core::Real >	ca1

numeric::xyzVector< core::Real >	n1

numeric::xyzVector< core::Real >	c1

numeric::xyzVector< core::Real >	ca2

numeric::xyzVector< core::Real >	n2

numeric::xyzVector< core::Real >	c2

ObjexxFCL::FArray2D< core::Real >	coords

ObjexxFCL::FArray2D< core::Real >	coords2

Friends
std::istream &	operator>> (std::istream &in, DisulfEpos &ds)

std::ostream &	operator<< (std::ostream &out, DisulfEpos const &ds)

Constructor & Destructor Documentation

◆ DisulfEpos()

DisulfEpos::DisulfEpos ( )

inline

Member Function Documentation

◆ make_farray()

ObjexxFCL::FArray2D<core::Real> DisulfEpos::make_farray	(	numeric::xyzVector< core::Real >	ca1,
		numeric::xyzVector< core::Real >	n1,
		numeric::xyzVector< core::Real >	c1,
		numeric::xyzVector< core::Real >	ca2,
		numeric::xyzVector< core::Real >	n2,
		numeric::xyzVector< core::Real >	c2
	)

inline

References c1, c2, ca1, ca2, create_a3b_hbs::f, n2, numeric::xyzVector< T >::x(), numeric::xyzVector< T >::y(), and numeric::xyzVector< T >::z().

Referenced by rms().

◆ rms() [1/3]

core::Real DisulfEpos::rms	(	core::conformation::Residue const &	res1,
		core::conformation::Residue const &	res2
	)

inline

References create_a3b_hbs::f, make_farray(), erraser_analysis::res1, erraser_analysis::res2, and rms().

◆ rms() [2/3]

core::Real DisulfEpos::rms	(	core::pose::Pose const &	pose,
		core::Size	res1,
		core::Size	res2
	)

inline

References beta_nonlocal::pose, erraser_analysis::res1, erraser_analysis::res2, and rms().

◆ rms() [3/3]

core::Real DisulfEpos::rms ( ObjexxFCL::FArray2D< core::Real > & farrayin )

inline

References coords, coords2, numeric::min(), and numeric::model_quality::rms_wrapper().

Referenced by rms().

Friends And Related Function Documentation

◆ operator<<

std::ostream& operator<<	(	std::ostream &	out,
		DisulfEpos const &	ds
	)

friend

◆ operator>>

std::istream& operator>>	(	std::istream &	in,
		DisulfEpos &	ds
	)

friend

Member Data Documentation

◆ c1

numeric::xyzVector<core::Real> DisulfEpos::c1

Referenced by make_farray().

◆ c2

numeric::xyzVector<core::Real> DisulfEpos::c2

Referenced by make_farray().

◆ ca1

numeric::xyzVector<core::Real> DisulfEpos::ca1

Referenced by make_farray().

◆ ca2

numeric::xyzVector<core::Real> DisulfEpos::ca2

Referenced by make_farray().

◆ coords

ObjexxFCL::FArray2D<core::Real> DisulfEpos::coords

Referenced by rms().

◆ coords2

ObjexxFCL::FArray2D<core::Real> DisulfEpos::coords2

Referenced by rms().

◆ n1

numeric::xyzVector<core::Real> DisulfEpos::n1

◆ n2

numeric::xyzVector<core::Real> DisulfEpos::n2

Referenced by make_farray().

◆ pdb

std::string DisulfEpos::pdb

Referenced by enumerate_junctions.DHR::print(), enumerate_junctions.Junction::print(), enumerate_junctions.Junction::to_component(), enumerate_junctions.DHR::to_component(), enumerate_junctions.Component::to_string(), enumerate_junctions.DHR::write_to_file(), and enumerate_junctions.Junction::write_to_file().

◆ pdbres1

core::Size DisulfEpos::pdbres1

◆ pdbres2

core::Size DisulfEpos::pdbres2

◆ sep

core::Size DisulfEpos::sep

◆ ss1

char DisulfEpos::ss1

◆ ss2

char DisulfEpos::ss2

The documentation for this class was generated from the following file:

src/apps/pilot/will/old/match_disulf.cc