tnm_sampler.cc File Reference

#include <core/types.hh>
#include <devel/init.hh>
#include <iostream>
#include <sstream>
#include <algorithm>
#include <iterator>
#include <iomanip>
#include <basic/Tracer.hh>
#include <ObjexxFCL/format.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/option_macros.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/scoring/rms_util.hh>
#include <utility/io/izstream.hh>
#include <utility/excn/Exceptions.hh>
#include <core/conformation/Residue.hh>
#include <core/import_pose/import_pose.hh>

Classes
class	Mode
class	TNM

Functions
void	register_options ()
void	tokenize_string (const std::string &sentence, utility::vector1< std::string > &words)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("protocols::TNMSampler")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References TNM::apply(), argv, utility::io::oc::cerr, utility::io::oc::cout, test.T009_Exceptions::e, basic::options::OptionKeys::in::file::extended_pose, ObjexxFCL::format::F(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::fn, pyrosetta.distributed.io::get_score_function(), create_a3b_hbs::i, basic::init(), name, in::file::native(), option, out::pdb(), pyrosetta.distributed.io::pose_from_file(), test.Workshop8test::reference_pose, register_options(), in::file::residue_type_set(), loops_kic::rms, in::file::s(), oop_conformations::scorefxn, basic::options::OptionKeys::relax::sequence, test_mm_lj::step, and basic::options::OptionKeys::inout::dbms::user.

register_options()

void register_options

(

)

References in::file::native(), NEW_OPT, OPT, out::pdb(), in::file::residue_type_set(), and in::file::s().

Referenced by main().

tokenize_string()

void tokenize_string	(	const std::string &	sentence,
		utility::vector1< std::string > &	words
	)

References erraser_util::copy(), and test.T008_Serialization::iss.

Referenced by TNM::load_normal_modes().

Variable Documentation

TR

basic::Tracer TR("protocols::TNMSampler") ( "protocols::TNMSampler"  )

static