read_tensor.cc File Reference

checking if we can read in a tensor from a .bin.gz and associated .json More...

#include <protocols/viewer/viewers.hh>
#include <devel/init.hh>
#include <numeric/MathNTensor_io.hh>
#include <numeric/interpolation/spline/PolycubicSpline.hh>
#include <numeric/interpolation/spline/PolycubicSpline.tmpl.hh>
#include <numeric/interpolation/interpolation.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/database/open.hh>
#include <core/types.hh>
#include <core/scoring/loop_graph/evaluator/util.hh>
#include <core/scoring/loop_graph/evaluator/SixDTransRotPotential.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/tools/make_vector1.hh>
#include <utility/excn/Exceptions.hh>
#include <numeric/xyzVector.io.hh>

Functions
void	check_tensor (numeric::MathNTensor< double, 6 > const &T, utility::vector1< numeric::Size > const &checkbins)
void	check_multilinear_interpolation (numeric::MathNTensor< double, 6 > const &T, utility::fixedsizearray1< numeric::Real, 6 > const &minval, utility::fixedsizearray1< numeric::Real, 6 > const &binwidth, utility::fixedsizearray1< numeric::Real, 6 > const &xs)
void	check_spline (numeric::MathNTensor< double, 6 > const &T, utility::fixedsizearray1< numeric::Real, 6 > const &minval, utility::fixedsizearray1< numeric::Real, 6 > const &binwidth, utility::fixedsizearray1< numeric::Real, 6 > const &xs)
void	check_6D_potential (numeric::MathNTensor< double, 6 > const &T, utility::json_spirit::mObject const &json, utility::fixedsizearray1< numeric::Real, 6 > const &xs)
void	read_tensor_test ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("read_tensor")

Detailed Description

checking if we can read in a tensor from a .bin.gz and associated .json

Function Documentation

check_6D_potential()

void check_6D_potential	(	numeric::MathNTensor< double, 6 > const &	T,
		utility::json_spirit::mObject const &	json,
		utility::fixedsizearray1< numeric::Real, 6 > const &	xs
	)

References basic::options::OptionKeys::ddg::json, predPRE::t, pyrosetta.distributed.cluster.exceptions::T, basic::options::TR, kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, x, and kmeans_adaptive_kernel_density_bb_dependent_rotlib::xs.

Referenced by read_tensor_test().

check_multilinear_interpolation()

void check_multilinear_interpolation	(	numeric::MathNTensor< double, 6 > const &	T,
		utility::fixedsizearray1< numeric::Real, 6 > const &	minval,
		utility::fixedsizearray1< numeric::Real, 6 > const &	binwidth,
		utility::fixedsizearray1< numeric::Real, 6 > const &	xs
	)

References numeric::interpolation::multilinear_interpolation(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, pyrosetta.distributed.cluster.exceptions::T, basic::options::TR, and kmeans_adaptive_kernel_density_bb_dependent_rotlib::xs.

Referenced by read_tensor_test().

check_spline()

void check_spline	(	numeric::MathNTensor< double, 6 > const &	T,
		utility::fixedsizearray1< numeric::Real, 6 > const &	minval,
		utility::fixedsizearray1< numeric::Real, 6 > const &	binwidth,
		utility::fixedsizearray1< numeric::Real, 6 > const &	xs
	)

References numeric::interpolation::spline::e_Periodic, create_a3b_hbs::i, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, pyrosetta.distributed.cluster.exceptions::T, basic::options::TR, and kmeans_adaptive_kernel_density_bb_dependent_rotlib::xs.

check_tensor()

void check_tensor	(	numeric::MathNTensor< double, 6 > const &	T,
		utility::vector1< numeric::Size > const &	checkbins
	)

References utility::tools::make_vector1(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, pyrosetta.distributed.cluster.exceptions::T, and basic::options::TR.

Referenced by read_tensor_test().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), my_main(), NEW_OPT, and viewer_main().

my_main()

void* my_main

(

void *

)

References utility::options::OptionKeys::options::exit, and read_tensor_test().

Referenced by main().

read_tensor_test()

void read_tensor_test

(

)

References check_6D_potential(), check_multilinear_interpolation(), check_tensor(), file_exists(), lactamize::filename, basic::database::full_name(), basic::options::OptionKeys::ddg::json, utility::tools::make_vector1(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, basic::options::option, numeric::read_tensor_from_file(), pyrosetta.distributed.cluster.exceptions::T, basic::options::TR, utility_exit_with_message, detail::write(), and kmeans_adaptive_kernel_density_bb_dependent_rotlib::xs.

Referenced by my_main().

Variable Documentation

TR

basic::Tracer TR("read_tensor") ( "read_tensor"  )

static