apps::pilot Namespace Reference

Namespaces
	frankdt
	momeara

Classes
class	KicSandbox
class	AlignChunkMover
class	MultiTemplateAlignChunkMover
class	CustomStarTreeMover
class	CustomFragmentMover
	A Mover that insert fragments to the loop region. More...
class	HelixMover
class	SampleSecondaryStructureAlignmentMover

Typedefs
typedef utility::pointer::shared_ptr< KicSandbox >	KicSandboxOP
typedef utility::pointer::shared_ptr< KicSandbox const >	KicSandboxCOP
typedef utility::pointer::owning_ptr< MultiTemplateAlignChunkMover >	MultiTemplateAlignChunkMoverOP
typedef utility::pointer::owning_ptr< MultiTemplateAlignChunkMover const >	MultiTemplateAlignChunkMoverCOP
typedef utility::pointer::owning_ptr< CustomFragmentMover >	CustomFragmentMoverOP
typedef utility::pointer::owning_ptr< CustomFragmentMover const >	CustomFragmentMoverCOP

Enumerations
enum	AlignOption { all_chunks , random_chunk }

Functions
bool	discontinued_upper (core::pose::Pose const &pose, Size const seqpos)
bool	discontinued_lower (core::pose::Pose const &pose, Size const seqpos)
std::list< Size >	downstream_residues_from_jump (core::pose::Pose const &pose, Size const jump_number)

Typedef Documentation

CustomFragmentMoverCOP

typedef utility::pointer::owning_ptr<CustomFragmentMover const> apps::pilot::CustomFragmentMoverCOP

CustomFragmentMoverOP

typedef utility::pointer::owning_ptr<CustomFragmentMover> apps::pilot::CustomFragmentMoverOP

KicSandboxCOP

typedef utility::pointer::shared_ptr<KicSandbox const> apps::pilot::KicSandboxCOP

KicSandboxOP

typedef utility::pointer::shared_ptr<KicSandbox> apps::pilot::KicSandboxOP

MultiTemplateAlignChunkMoverCOP

typedef utility::pointer::owning_ptr<MultiTemplateAlignChunkMover const> apps::pilot::MultiTemplateAlignChunkMoverCOP

MultiTemplateAlignChunkMoverOP

typedef utility::pointer::owning_ptr<MultiTemplateAlignChunkMover> apps::pilot::MultiTemplateAlignChunkMoverOP

Enumeration Type Documentation

AlignOption

enum apps::pilot::AlignOption

Enumerator
all_chunks
random_chunk

Function Documentation

discontinued_lower()

bool apps::pilot::discontinued_lower	(	core::pose::Pose const &	pose,
		Size const	seqpos
	)

References beta_nonlocal::pose.

Referenced by apps::pilot::HelixMover::get_helix_centers(), apps::pilot::AlignChunkMover::get_local_sequence_mapping(), and apps::pilot::AlignChunkMover::steal_torsion_from_template().

discontinued_upper()

bool apps::pilot::discontinued_upper	(	core::pose::Pose const &	pose,
		Size const	seqpos
	)

References beta_nonlocal::pose.

Referenced by apps::pilot::HelixMover::get_helix_centers(), apps::pilot::AlignChunkMover::get_local_sequence_mapping(), and apps::pilot::AlignChunkMover::steal_torsion_from_template().

downstream_residues_from_jump()

std::list< Size > apps::pilot::downstream_residues_from_jump	(	core::pose::Pose const &	pose,
		Size const	jump_number
	)

References beta_nonlocal::pose, and basic::options::OptionKeys::cutoutdomain::start.

Referenced by apps::pilot::HelixMover::apply(), ChallengeMover::initialize_pose(), ChallengeMover::realign(), and apps::pilot::AlignChunkMover::set_aligned_chunk().