consolidate_clusters.cc File Reference

#include <protocols/moves/mc_convergence_checks/Pool_ConvergenceCheck.hh>
#include <core/pose/Pose.hh>
#include <utility/vector1.hh>
#include <iostream>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentStruct.hh>
#include <devel/init.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <basic/datacache/CacheableString.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/datacache/CacheableStringFloatMap.hh>
#include <fstream>
#include <ObjexxFCL/FArray2D.hh>
#include <protocols/toolbox/DecoySetEvaluation.hh>
#include <protocols/toolbox/superimpose.hh>
#include <numeric/util.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/after_opts.hh>
#include <utility/file/FileName.hh>
#include <utility/excn/Exceptions.hh>

Classes
struct	Cluster
struct	SetOfClusters

Functions
void	read_occupancy_data (SetOfClusters &set, std::string &occupancy_data, std::string const &silentfile, core::Real &transition_threshold)
int	main (int argc, char *argv[])

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References SetOfClusters::add(), argv, SetOfClusters::clear(), SetOfClusters::consolidate(), utility::io::oc::cout, test.T009_Exceptions::e, SetOfClusters::get(), create_a3b_hbs::ii, basic::init(), beta_nonlocal::jj, kk, basic::options::OptionKeys::max_radius, numeric::median(), utility::file::FileName::name(), NEW_OPT, Cluster::occupancy_, SetOfClusters::occupancy_, option, basic::options::OptionKeys::motifs::output_file, Cluster::radius_, SetOfClusters::radius_, read_occupancy_data(), in::file::silent(), SetOfClusters::size(), Cluster::tag_, and basic::options::OptionKeys::canonical_sampling::sampling::transition_threshold.

read_occupancy_data()

void read_occupancy_data	(	SetOfClusters &	set,
		std::string &	occupancy_data,
		std::string const &	silentfile,
		core::Real &	transition_threshold
	)

References utility::io::oc::cout, basic::options::OptionKeys::mh::filter::occupancy, beta_nonlocal::pose, set(), sfd, challenge::ss, revert_app::threshold, and basic::options::OptionKeys::canonical_sampling::sampling::transition_threshold.

Referenced by main().