scaffold_matcher.cc File Reference

#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/ncbb/util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/import_pose/import_pose.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/conformation/Conformation.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/rotamer_trials.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/constraints/Constraint.fwd.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/constraints/AmbiguousConstraint.hh>
#include <core/scoring/constraints/BackboneStubConstraint.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/PyMOLMover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/ncbb/oop/OopPatcher.hh>
#include <protocols/ncbb/hbs/HbsPatcher.hh>
#include <protocols/simple_moves/chiral/ChiralMover.hh>
#include <protocols/hotspot_hashing/HotspotStubSet.hh>
#include <protocols/hotspot_hashing/HotspotStub.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/rigid/RB_geometry.hh>
#include <protocols/ncbb/oop/OopDockDesignProtocol.hh>
#include <protocols/ncbb/NcbbDockDesignProtocol.hh>
#include <protocols/ncbb/util.hh>
#include <basic/MetricValue.hh>
#include <core/pose/metrics/CalculatorFactory.hh>
#include <protocols/simple_pose_metric_calculators/NumberHBondsCalculator.hh>
#include <protocols/simple_pose_metric_calculators/BuriedUnsatisfiedPolarsCalculator.hh>
#include <protocols/pose_metric_calculators/PackstatCalculator.hh>
#include <devel/init.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/util.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>

Classes
class	HotspotPlacementMover

Namespaces
	scaffold_matcher

Typedefs
using	HotspotPlacementMoverOP = utility::pointer::shared_ptr< HotspotPlacementMover >
using	HotspotPlacementMoverCOP = utility::pointer::shared_ptr< const HotspotPlacementMover >

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("Hotspot Placement")
BooleanOptionKey const	scaffold_matcher::pymol ("scaffold_matcher::pymol")
BooleanOptionKey const	scaffold_matcher::keep_history ("scaffold_matcher::keep_history")
StringOptionKey const	scaffold_matcher::primary_hs_stub_lib ("scaffold_matcher::primary_hs_stub_lib")
FileVectorOptionKey const	scaffold_matcher::ancillary_hs_stub_libs ("scaffold_matcher::ancillary_hs_stub_libs")
StringOptionKey const	scaffold_matcher::hstarget ("scaffold_matcher::hstarget")
BooleanOptionKey const	scaffold_matcher::hs_repack_only ("scaffold_matcher::hs_repack_only")
RealOptionKey const	scaffold_matcher::stub_constraint_strength ("scaffold_matcher::stub_constraint_strength")

Typedef Documentation

HotspotPlacementMoverCOP

using HotspotPlacementMoverCOP = utility::pointer::shared_ptr<const HotspotPlacementMover>

HotspotPlacementMoverOP

using HotspotPlacementMoverOP = utility::pointer::shared_ptr<HotspotPlacementMover>

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References utility::options::OptionCollection::add(), scaffold_matcher::ancillary_hs_stub_libs, argv, utility::options::ScalarOption_T_< K, T >::def(), test.T009_Exceptions::e, scaffold_matcher::hs_repack_only, scaffold_matcher::hstarget, basic::init(), scaffold_matcher::keep_history, basic::options::option, scaffold_matcher::primary_hs_stub_lib, scaffold_matcher::pymol, and scaffold_matcher::stub_constraint_strength.

Variable Documentation

TR

basic::Tracer TR("Hotspot Placement") ( "Hotspot Placement"  )

static