r_count_neighbours.cc File Reference

check quality of fragments against input structure More...

#include <protocols/abinitio/Templates.hh>
#include <protocols/moves/Mover.hh>
#include <core/pose/Pose.hh>
#include <devel/init.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/constraints/BoundConstraint.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <basic/options/option_macros.hh>
#include <utility/vector1.hh>
#include <basic/Tracer.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <utility/exit.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Atom.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/scoring/TwelveANeighborGraph.hh>
#include <core/scoring/ContextGraphTypes.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/func/FuncFactory.hh>
#include <core/scoring/constraints/NamedAtomPairConstraint.hh>
#include <utility/io/mpistream.hh>

Classes
class	EnvToolMover

Typedefs
typedef utility::pointer::owning_ptr< EnvToolMover >	EnvToolMoverOP
typedef utility::pointer::owning_ptr< EnvToolMover const >	EnvToolMoverCOP

Functions
	OPT_KEY (Integer, level) void register_options()
Real	sqr (Real x)
void	run ()
int	main (int argc, char *argv[])
	=============================== MAIN ============================================================ More...

Variables
static basic::Tracer	tr ("main")
Distance const	start_sig = 9.8
Distance const	end_sig = 10.2
DistanceSquared const	start_sig2 = start_sig*start_sig
DistanceSquared const	end_sig2 = end_sig*end_sig

Detailed Description

check quality of fragments against input structure

Author

Oliver Lange

Typedef Documentation

EnvToolMoverCOP

typedef utility::pointer::owning_ptr< EnvToolMover const > EnvToolMoverCOP

EnvToolMoverOP

typedef utility::pointer::owning_ptr< EnvToolMover > EnvToolMoverOP

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

=============================== MAIN ============================================================

References argv, test.T009_Exceptions::e, basic::init(), register_options(), and run().

OPT_KEY()

OPT_KEY	(	Integer	,
		level
	)

References constraints::cst_file(), basic::options::OptionKeys::out::level, NEW_OPT, OPT, out::prefix(), register_options(), in::file::s(), revert_app::threshold, and top.

run()

void run

(

)

References basic::options::OptionKeys::in::path::database, basic::Tracer::Info, basic::options::OptionKeys::constraints::named, basic::options::OptionKeys::constraints::no_linearize_bounded, basic::options::option, option, tr, and basic::options::OptionKeys::inout::dbms::user.

Referenced by main().

sqr()

Real sqr ( Real  x )

inline

References x.

Referenced by EnvToolMover::sigmoidish_neighbor().

Variable Documentation

end_sig

Distance const end_sig = 10.2

Referenced by EnvToolMover::sigmoidish_neighbor().

end_sig2

DistanceSquared const end_sig2 = end_sig*end_sig

Referenced by EnvToolMover::sigmoidish_neighbor().

start_sig

Distance const start_sig = 9.8

Referenced by EnvToolMover::sigmoidish_neighbor().

start_sig2

DistanceSquared const start_sig2 = start_sig*start_sig

Referenced by EnvToolMover::sigmoidish_neighbor().

tr

basic::Tracer tr("main") ( "main"  )

static

Referenced by run().