betacat_movie.cc File Reference

#include <core/pose/Pose.hh>
#include <core/conformation/Conformation.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/operation/TaskOperation.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/Energies.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <utility/pointer/owning_ptr.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/minimization_packing/RotamerTrialsMover.hh>
#include <protocols/moves/TrialMover.hh>
#include <protocols/minimization_packing/TaskAwareMinMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/RepeatMover.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/viewer/visualize.hh>
#include <protocols/rigid/RB_geometry.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/MetricValue.hh>
#include <core/pose/metrics/CalculatorFactory.hh>
#include <core/pose/metrics/simple_calculators/SasaCalculator.hh>
#include <protocols/simple_pose_metric_calculators/NumberHBondsCalculator.hh>
#include <protocols/simple_pose_metric_calculators/BuriedUnsatisfiedPolarsCalculator.hh>
#include <protocols/pose_metric_calculators/PackstatCalculator.hh>
#include <devel/init.hh>
#include <basic/Tracer.hh>
#include <utility/exit.hh>
#include <utility/vector1.hh>
#include <numeric/random/random.hh>
#include <iostream>
#include <string>
#include <sstream>
#include <utility/vector0.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/cyclization.OptionKeys.gen.hh>
#include <protocols/moves/PyMOLMover.hh>
#include <protocols/simple_moves/CyclizationMover.hh>
#include <protocols/loops/Loops.fwd.hh>

Classes
class	DougsDockDesignMinimizeMagicMover

Namespaces
	dddm

Typedefs
typedef utility::pointer::owning_ptr< DougsDockDesignMinimizeMagicMover >	DougsDockDesignMinimizeMagicMoverOP
typedef utility::pointer::owning_ptr< DougsDockDesignMinimizeMagicMover const >	DougsDockDesignMinimizeMagicMoverCOP

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.doug")
RealOptionKey const	dddm::pert_mc_temp ("dddm::pert_mc_temp")
RealOptionKey const	dddm::pert_dock_rot_mag ("dddm::pert_dock_rot_mag")
RealOptionKey const	dddm::pert_dock_trans_mag ("dddm::pert_dock_trans_mag")
RealOptionKey const	dddm::pert_pep_small_temp ("dddm::pert_pep_small_temp")
RealOptionKey const	dddm::pert_pep_small_H ("dddm::pert_pep_small_H")
RealOptionKey const	dddm::pert_pep_small_L ("dddm::pert_pep_small_L")
RealOptionKey const	dddm::pert_pep_small_E ("dddm::pert_pep_small_E")
RealOptionKey const	dddm::pert_pep_shear_temp ("dddm::pert_pep_shear_temp")
RealOptionKey const	dddm::pert_pep_shear_H ("dddm::pert_pep_shear_H")
RealOptionKey const	dddm::pert_pep_shear_L ("dddm::pert_pep_shear_L")
RealOptionKey const	dddm::pert_pep_shear_E ("dddm::pert_pep_shear_E")
RealOptionKey const	dddm::pert_ter_small_temp ("dddm::pert_ter_small_temp")
RealOptionKey const	dddm::pert_ter_small_H ("dddm::pert_ter_small_H")
RealOptionKey const	dddm::pert_ter_small_L ("dddm::pert_ter_small_L")
RealOptionKey const	dddm::pert_ter_small_E ("dddm::pert_ter_small_E")
RealOptionKey const	dddm::pert_ter_shear_temp ("dddm::pert_ter_shear_temp")
RealOptionKey const	dddm::pert_ter_shear_H ("dddm::pert_ter_shear_H")
RealOptionKey const	dddm::pert_ter_shear_L ("dddm::pert_ter_shear_L")
RealOptionKey const	dddm::pert_ter_shear_E ("dddm::pert_ter_shear_E")
IntegerOptionKey const	dddm::pert_pep_num_rep ("dddm::pert_pep_num_rep")
IntegerOptionKey const	dddm::pert_ter_num_rep ("dddm::pert_ter_num_rep")
IntegerOptionKey const	dddm::pert_num ("dddm::pert_num")
IntegerOptionKey const	dddm::inner_num ("dddm::inner_num")
RealOptionKey const	dddm::ia_ener ("dddm::ia_ener")
RealOptionKey const	dddm::desn_mc_temp ("dddm::desn_mc_temp")

Typedef Documentation

DougsDockDesignMinimizeMagicMoverCOP

typedef utility::pointer::owning_ptr< DougsDockDesignMinimizeMagicMover const > DougsDockDesignMinimizeMagicMoverCOP

DougsDockDesignMinimizeMagicMoverOP

typedef utility::pointer::owning_ptr< DougsDockDesignMinimizeMagicMover > DougsDockDesignMinimizeMagicMoverOP

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::cm::cm, dddm::desn_mc_temp, dddm::ia_ener, basic::init(), dddm::inner_num, basic::options::OptionKeys::cyclization::num_min_rebuild, option, dddm::pert_dock_rot_mag, dddm::pert_dock_trans_mag, dddm::pert_mc_temp, dddm::pert_num, dddm::pert_pep_num_rep, dddm::pert_pep_shear_E, dddm::pert_pep_shear_H, dddm::pert_pep_shear_L, dddm::pert_pep_shear_temp, dddm::pert_pep_small_E, dddm::pert_pep_small_H, dddm::pert_pep_small_L, dddm::pert_pep_small_temp, dddm::pert_ter_num_rep, dddm::pert_ter_shear_E, dddm::pert_ter_shear_H, dddm::pert_ter_shear_L, dddm::pert_ter_shear_temp, dddm::pert_ter_small_E, dddm::pert_ter_small_H, dddm::pert_ter_small_L, dddm::pert_ter_small_temp, and value.

Variable Documentation

TR

basic::Tracer TR("apps.pilot.doug") ( "apps.pilot.doug"  )

static

Referenced by DougsDockDesignMinimizeMagicMover::apply().