jcluster.cc File Reference

#include <devel/init.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <basic/options/option.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <core/import_pose/pose_stream/MetaPoseInputStream.hh>
#include <utility/vector1.hh>
#include <string>
#include <iostream>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <numeric/random/random.fwd.hh>
#include <utility/excn/Exceptions.hh>

Functions
utility::vector1< unsigned int >	get_dm (core::pose::Pose &pose, double const dist_threshold=9, std::string const &atom_name="CA")
void	print_debug_information (utility::vector1< utility::vector1< double > > const &resp)
void	print_dm (utility::vector1< unsigned int > dm)
int	main (int argc, char *argv[])

Function Documentation

get_dm()

utility::vector1< unsigned int > get_dm	(	core::pose::Pose &	pose,
		double const	dist_threshold = 9,
		std::string const &	atom_name = "CA"
	)

References create_a3b_hbs::ii, beta_nonlocal::jj, N, and beta_nonlocal::pose.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cout, test.T009_Exceptions::e, get_dm(), create_a3b_hbs::ii, basic::init(), gaussian-sampling::input, beta_nonlocal::jj, PREcst::K, kk, option, basic::options::OptionKeys::mp::assembly::poses, basic::options::OptionKeys::in::file::residue_type_set, in::file::residue_type_set(), runtime_assert, and numeric::random::uniform().

print_debug_information()

void print_debug_information

(

utility::vector1< utility::vector1< double > > const &

resp

)

References utility::io::oc::cout, create_a3b_hbs::ii, beta_nonlocal::jj, and subloop_histogram::size.

print_dm()

void print_dm

(

utility::vector1< unsigned int >

dm

)

References utility::io::oc::cout, and create_a3b_hbs::ii.