#include <core/fragment/BBTorsionSRFD.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/FragData.fwd.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/fragment/FragSet.hh>
#include <core/types.hh>
#include <basic/database/open.hh>
#include <utility/vector1.hh>
#include <string>
#include <iosfwd>
#include <sstream>

Functions
void	read_fragdata (core::fragment::FragDataCOPs &fds, std::istream &in)

std::map< std::string, core::fragment::FragDataCOPs >	get_frags_map ()

core::fragment::FragSetOP	make_frag_set (std::string ss, std::map< std::string, core::fragment::FragDataCOPs > &fds, int start=1, int stop=-1)

core::fragment::FragSetOP	make_frag_set (utility::vector1< char > ss, std::map< std::string, core::fragment::FragDataCOPs > &fds, int start=1, int stop=-1)

core::fragment::FragSetOP	make_frag_set_9mers (core::Size nres)

Function Documentation

◆ get_frags_map()

std::map<std::string, core::fragment::FragDataCOPs > get_frags_map ( )

References basic::options::OptionKeys::in::in, basic::database::open(), and read_fragdata().

◆ make_frag_set() [1/2]

core::fragment::FragSetOP make_frag_set	(	std::string	ss,
		std::map< std::string, core::fragment::FragDataCOPs > &	fds,
		int	start = `1`,
		int	stop = `-1`
	)

References end, fi(), basic::options::OptionKeys::frags::frags, numeric::kinematic_closure::frame(), create_a3b_hbs::i, subloop_histogram::iterator, create_a3b_hbs::j, create_a3b_hbs::k, extract_by_sidechain_sasa_score::l, challenge::ss, basic::options::OptionKeys::mh::match::ss1, basic::options::OptionKeys::mh::match::ss2, basic::options::OptionKeys::cutoutdomain::start, and utility_exit_with_message.

Referenced by make_frag_set().

◆ make_frag_set() [2/2]

core::fragment::FragSetOP make_frag_set	(	utility::vector1< char >	ss,
		std::map< std::string, core::fragment::FragDataCOPs > &	fds,
		int	start = `1`,
		int	stop = `-1`
	)

References create_a3b_hbs::i, make_frag_set(), docking::s, challenge::ss, and basic::options::OptionKeys::cutoutdomain::start.

◆ make_frag_set_9mers()

core::fragment::FragSetOP make_frag_set_9mers ( core::Size nres )

References fi(), basic::options::OptionKeys::frags::frags, numeric::kinematic_closure::frame(), create_a3b_hbs::i, basic::options::OptionKeys::in::in, subloop_histogram::iterator, create_a3b_hbs::nres, and read_fragdata().

◆ read_fragdata()

void read_fragdata	(	core::fragment::FragDataCOPs &	fds,
		std::istream &	in
	)

References cal_vdw_radius_pool::buf, count, create_a3b_hbs::i, test.T008_Serialization::iss, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, and kic_runner::pdb.