r_frag_picker.cc File Reference

#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/fragment/FrameIterator.hh>
#include <core/fragment/FragID_Iterator.hh>
#include <core/fragment/BBTorsionSRFD.hh>
#include <core/id/SequenceMapping.hh>
#include <core/sequence/util.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/Stub.hh>
#include <core/kinematics/RT.hh>
#include <core/fragment/util.hh>
#include <protocols/jumping/JumpSample.hh>
#include <protocols/jumping/JumpSetup.hh>
#include <core/scoring/rms_util.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <devel/init.hh>
#include <core/chemical/ChemicalManager.hh>
#include <protocols/idealize.hh>
#include <numeric/angle.functions.hh>
#include <numeric/conversions.hh>
#include <basic/options/option.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <basic/options/option_macros.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <core/import_pose/import_pose.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <utility/excn/Exceptions.hh>

Classes
class	ThisApplication

Functions
void	make_your_own_alignment (id::SequenceMapping &mapping)
void	dump_movemap (kinematics::MoveMap const &mm, Size nres, std::ostream &out)
void	dump_sequences (utility::vector1< std::string > seq, std::ostream &out)
int	main (int argc, char **argv)

Variables
static basic::Tracer	tr ("main")

Function Documentation

dump_movemap()

void dump_movemap	(	kinematics::MoveMap const &	mm,
		Size	nres,
		std::ostream &	out
	)

References create_a3b_hbs::i, beta_nonlocal::mm, and create_a3b_hbs::nres.

Referenced by ThisApplication::run().

dump_sequences()

void dump_sequences	(	utility::vector1< std::string >	seq,
		std::ostream &	out
	)

References create_a3b_hbs::i, max(), create_a3b_hbs::nres, docking::s, beta_sc_scan::seq, and subloop_histogram::size.

main()

int main	(	int	argc,
		char **	argv
	)

References job_manager::app, argv, test.T009_Exceptions::e, basic::init(), and ThisApplication::register_options().

make_your_own_alignment()

void make_your_own_alignment

(

id::SequenceMapping &

mapping

)

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, basic::options::OptionKeys::stepwise::s1, and basic::options::OptionKeys::stepwise::s2.

Variable Documentation

tr

basic::Tracer tr("main") ( "main"  )

static

Referenced by ThisApplication::run(), and ThisApplication::setup().