draw_matrix.m File Reference

Functions
end end get env	env_index (i)
	num_res_env (res_index(i), env_index(i))
	if (env_index(i)==1) if(env_index(j)
i, j, :	pair ()
end else	if (env_index(j)==1) %c-s core_surf(ai
	subplot (2, 2, 1)
	imshow (1-mat/2) mat = calc_pair_matrix(surf_core_close+core_surf_close)
	subplot (2, 2, 2)
	subplot (2, 2, 3)
	subplot (2, 2, 4)

Variables
	reslist
	GLU
	ASP
	ARG
	GLN
	ASN
	PRO
	SER
	THR
	HIS
	GLY
	ALA
	TYR
	MET
	TRP
	VAL
	LEU
	PHE
	ILE
	CYS
	res_index = zeros(40,1)
	env_index = zeros(40,1)
	num_res_env = zeros(20,2)
for	i
	break
end split	surf_surf =zeros(20,20,30)
	surf_core =zeros(20,20,30)
	core_surf =zeros(20,20,30)
	core_core =zeros(20,20,30)
for	j
end else	aj
	surf_core_close = sum(surf_core(:,:,1:14),3)
	core_surf_close = sum(core_surf(:,:,1:14),3)
	core_core_close = sum(core_core(:,:,1:14),3)
	mat = calc_pair_matrix(core_core_close)

Function Documentation

env_index()

end end get env env_index

(

i

)

if() [1/2]

if

(

env_index(i)

= =1

)

if() [2/2]

end else if

(

env_index(j)

= =1

)

imshow()

imshow

(

1-mat/

2

)

= calc_pair_matrix(surf_core_close+core_surf_close)

num_res_env()

num_res_env	(	res_index(i)	,
		env_index(i)
	)

pair()

i, j, : pair ( )

virtual

subplot() [1/4]

subplot	(	2	,
		2	,
		1
	)

subplot() [2/4]

subplot	(	2	,
		2	,
		2
	)

subplot() [3/4]

subplot	(	2	,
		2	,
		3
	)

subplot() [4/4]

subplot	(	2	,
		2	,
		4
	)

Variable Documentation

aj

end else aj

ALA

ALA

ARG

ARG

ASN

ASN

ASP

ASP

break

break

core_core

core_core =zeros(20,20,30)

core_core_close

core_core_close = sum(core_core(:,:,1:14),3)

core_surf

core_surf =zeros(20,20,30)

core_surf_close

core_surf_close = sum(core_surf(:,:,1:14),3)

CYS

CYS

env_index

env_index = zeros(40,1)

GLN

GLN

GLU

GLU

GLY

GLY

HIS

HIS

i

end end end end for i

Initial value:

= 1:40
  %get aa
  for n = 1:20
    if (list(i,1:3)==reslist(n,:))
      res_index(i)=n

ILE

ILE

j

end else j

Initial value:

= 1:40
    aj = res_index(j)

LEU

LEU

mat

mat = calc_pair_matrix(core_core_close)

Referenced by numeric::random::random_rotation_angle().

MET

MET

num_res_env

num_res_env = zeros(20,2)

PHE

PHE

PRO

PRO

res_index

res_index = zeros(40,1)

reslist

reslist

Initial value:

= 

SER

SER

surf_core

surf_core =zeros(20,20,30)

surf_core_close

surf_core_close = sum(surf_core(:,:,1:14),3)

surf_surf

end split surf_surf =zeros(20,20,30)

THR

THR

TRP

TRP

TYR

TYR

VAL

VAL