screen_phosphates.cc File Reference

#include <core/types.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/import_pose/import_pose.hh>
#include <core/import_pose/FullModelPoseBuilder.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <devel/init.hh>
#include <core/pose/Pose.hh>
#include <core/pose/variant_util.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <protocols/rna/denovo/util.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/stepwise/modeler/rna/phosphate/MultiPhosphateSampler.hh>
#include <protocols/viewer/viewers.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/full_model.OptionKeys.gen.hh>
#include <basic/options/keys/stepwise.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <basic/options/option_macros.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <utility/file/FileName.hh>
#include <iostream>
#include <string>

Functions
void	screen_phosphates ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.rhiju.screen_phosphates")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References basic::options::OptionKeys::magnesium::montecarlo::add_delete_frequency, basic::options::OptionKeys::stepwise::monte_carlo::allow_internal_hinge_moves, basic::options::OptionKeys::stepwise::monte_carlo::allow_internal_local_moves, basic::options::OptionKeys::stepwise::monte_carlo::allow_skip_bulge, basic::options::OptionKeys::stepwise::monte_carlo::allow_variable_bond_geometry, argv, basic::options::OptionKeys::full_model::rna::bulge_res, basic::options::OptionKeys::rna::corrected_geo, utility::io::oc::cout, basic::options::OptionKeys::stepwise::monte_carlo::cycles, test.T009_Exceptions::e, basic::options::OptionKeys::rna::erraser::erraser, basic::options::OptionKeys::full_model::extra_min_res, in::file::fasta(), basic::options::OptionKeys::stepwise::rna::force_centroid_interaction, basic::options::OptionKeys::full_model::rna::force_syn_chi_res_list, basic::init(), in::file::input_res(), basic::options::OptionKeys::stepwise::monte_carlo::just_min_after_mutation_frequency, basic::options::OptionKeys::stepwise::monte_carlo::minimize_single_res_frequency, my_main(), in::file::native(), NEW_OPT, out::nstruct(), basic::options::OptionKeys::stepwise::num_random_samples, option, basic::options::OptionKeys::full_model::sample_res, out::file::silent(), basic::options::OptionKeys::stepwise::monte_carlo::skip_deletions, basic::options::OptionKeys::stepwise::monte_carlo::switch_focus_frequency, local::temperature, basic::options::OptionKeys::full_model::rna::terminal_res, basic::options::OptionKeys::stepwise::monte_carlo::verbose_scores, viewer_main(), basic::options::OptionKeys::stepwise::rna::virtual_sugar_keep_base_fixed, and score::weights().

my_main()

void* my_main

(

void *

)

References utility::io::oc::cout, utility::options::OptionKeys::options::exit, and screen_phosphates().

Referenced by main().

screen_phosphates()

void screen_phosphates

(

)

References basic::options::OptionKeys::chemical::chemical, pyrosetta.io::create_score_function, pyrosetta.distributed.io::get_score_function(), basic::options::OptionKeys::epr_deer::input_files, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, in::file::native(), docking::native_pose, option, full_model::other_poses(), beta_nonlocal::pose, in::file::s(), oop_conformations::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, TR, basic::options::OptionKeys::inout::dbms::user, and score::weights().

Referenced by my_main().

Variable Documentation

TR

basic::Tracer TR("apps.pilot.rhiju.screen_phosphates") ( "apps.pilot.rhiju.screen_phosphates"  )

static

Referenced by screen_phosphates().