hierarchical_clustering.cc File Reference

#include <devel/init.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <utility/exit.hh>
#include <basic/Tracer.hh>
#include <utility/io/izstream.hh>
#include <numeric/ClusteringTreeNode.hh>
#include <numeric/agglomerative_hierarchical_clustering.hh>
#include <string>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>

Functions
void	register_options ()
void	read_distances (std::istream &input, utility::vector1< utility::vector1< numeric::Real > > &distances)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("cluster_anything")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, average(), numeric::AgglomerativeHierarchicalClusterer::cluster(), utility::io::oc::cout, basic::options::OptionKeys::optE::data_in, basic::options::OptionKeys::optE::data_out, test.T009_Exceptions::e, numeric::get_cluster_data(), create_a3b_hbs::i, basic::init(), create_a3b_hbs::j, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, option, read_distances(), register_options(), basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

read_distances()

void read_distances	(	std::istream &	input,
		utility::vector1< utility::vector1< numeric::Real > > &	distances
	)

References dist(), getline(), create_a3b_hbs::i, gaussian-sampling::input, line, pna::resi, basic::options::OptionKeys::cmiles::jumping::resj, and TR.

Referenced by main().

register_options()

void register_options

(

)

References average(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, and NEW_OPT.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("cluster_anything") ( "cluster_anything"  )

static

Referenced by read_distances().