protocols::antibody Namespace Reference

Namespaces
	design
	task_operations

Classes
class	AntibodyInfoRMLoaderCreator
class	AntibodyInfoRMOptions
class	AntibodyInfoRMOptionsCreator

Typedefs
typedef utility::pointer::shared_ptr< AntibodyInfoRMLoader >	AntibodyInfoRMLoaderOP
typedef utility::pointer::shared_ptr< AntibodyInfoRMLoader const >	AntibodyInfoRMLoaderCOP
typedef utility::pointer::shared_ptr< AntibodyInfoRMOptions >	AntibodyInfoRMOptionsOP
typedef utility::pointer::shared_ptr< AntibodyInfoRMOptions const >	AntibodyInfoRMOptionsCOP

Functions
void	model_cdrs (core::pose::Pose &pose, AntibodyInfoCOP ab_info)
void	keep_cdr (core::pose::Pose &pose, AntibodyInfo &ab_info, CDRNameEnum cdr)
void	graft_in_cdr (core::pose::Pose &pose, AntibodyInfo &ab_info, CDRNameEnum cdr, core::pose::PoseOP template_pose)
void	copy_in_seq (core::pose::Pose &pose, AntibodyInfo &ab_info, CDRNameEnum cdr, std::string seq)

Typedef Documentation

AntibodyInfoRMLoaderCOP

typedef utility::pointer::shared_ptr< AntibodyInfoRMLoader const > protocols::antibody::AntibodyInfoRMLoaderCOP

AntibodyInfoRMLoaderOP

typedef utility::pointer::shared_ptr< AntibodyInfoRMLoader > protocols::antibody::AntibodyInfoRMLoaderOP

AntibodyInfoRMOptionsCOP

typedef utility::pointer::shared_ptr< AntibodyInfoRMOptions const > protocols::antibody::AntibodyInfoRMOptionsCOP

AntibodyInfoRMOptionsOP

typedef utility::pointer::shared_ptr< AntibodyInfoRMOptions > protocols::antibody::AntibodyInfoRMOptionsOP

Function Documentation

copy_in_seq()

void protocols::antibody::copy_in_seq	(	core::pose::Pose &	pose,
		AntibodyInfo &	ab_info,
		CDRNameEnum	cdr,
		std::string	seq
	)

Referenced by model_cdrs().

graft_in_cdr()

void protocols::antibody::graft_in_cdr	(	core::pose::Pose &	pose,
		AntibodyInfo &	ab_info,
		CDRNameEnum	cdr,
		core::pose::PoseOP	template_pose
	)

Referenced by model_cdrs().

keep_cdr()

void protocols::antibody::keep_cdr	(	core::pose::Pose &	pose,
		AntibodyInfo &	ab_info,
		CDRNameEnum	cdr
	)

References beta_nonlocal::pose.

Referenced by model_cdrs().

model_cdrs()

void protocols::antibody::model_cdrs	(	core::pose::Pose &	pose,
		AntibodyInfoCOP	ab_info
	)

References protocols::antibody::design::AntibodyDesignMoverGenerator::apply(), copy_in_seq(), protocols::antibody::design::AntibodyDesignMoverGenerator::generate_relax(), protocols::antibody::design::AntibodyDesignMoverGenerator::generate_repack_cdrs(), graft_in_cdr(), create_a3b_hbs::i, keep_cdr(), test.G201_Module_Structure::l1, protocols::antibody::design::AntibodyDesignMoverGenerator::neighbor_detection_dis(), option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file(), protocols::antibody::design::AntibodyDesignMoverGenerator::set_cdr_range(), protocols::antibody::design::AntibodyDesignMoverGenerator::set_include_neighbor_sc(), protocols::antibody::design::AntibodyDesignMoverGenerator::set_min_sc(), and protocols::antibody::design::AntibodyDesignMoverGenerator::stem_size().