analyze_dna.cc File Reference

#include <protocols/viewer/viewers.hh>
#include <core/scoring/dna/setup.hh>
#include <utility/excn/Exceptions.hh>
#include <protocols/dna/util.hh>
#include <core/pose/Pose.hh>
#include <basic/options/util.hh>
#include <devel/init.hh>
#include <basic/Tracer.hh>
#include <basic/options/keys/dna.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <core/import_pose/import_pose.hh>

Functions
void	dna_geometry ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	tt ("demo.phil.analyze_dna", basic::t_trace)
static basic::Tracer	td ("demo.phil.analyze_dna", basic::t_debug)
static basic::Tracer	ti ("demo.phil.analyze_dna", basic::t_info)

Function Documentation

dna_geometry()

void dna_geometry

(

)

References utility::io::oc::cout, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file(), and basic::options::start_files().

Referenced by my_main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), my_main(), and viewer_main().

my_main()

void* my_main

(

void *

)

References dna_geometry(), utility::options::OptionKeys::options::exit, dna::specificity::mode(), SmotifHasher::mode, option, and value.

Referenced by main().

Variable Documentation

td

basic::Tracer td("demo.phil.analyze_dna", basic::t_debug) ( "demo.phil.analyze_dna"  , basic::t_debug    )

static

Referenced by dock(), binder::is_bindable(), main(), TCDock::min_termini_dis(), TCDock::min_termini_proj(), binder::request_bindings(), and TCDock::termini_score().

ti

basic::Tracer ti("demo.phil.analyze_dna", basic::t_info) ( "demo.phil.analyze_dna"  , basic::t_info    )

static

Referenced by main(), numeric::linear_algebra::qzval(), numeric::linear_algebra::qzvec(), and ui::task::Task::task_data().

tt

basic::Tracer tt("demo.phil.analyze_dna", basic::t_trace) ( "demo.phil.analyze_dna"  , basic::t_trace    )

static

Referenced by cleanup_dna_chains(), dna_chain_check(), dna_dr_test(), hbond_stats(), luxr_test(), main(), not1_loop_test(), and numeric::expression_parser::token_type_name().